SMTL ID : 7cip.1 (3 other biounits)

Microbial Hormone-sensitive lipase E53 wild type

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.96, D.119, Y.120, L.122 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.96, A:D.96, A:L.97, A:D.119, A:D.119

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.140, P.179, A.180, D.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:P.179 Water bridges: A:D.181, A:D.181 EDO.4: 1 residues within 4Å: Chain A: R.302 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.302 EDO.5: 4 residues within 4Å: Chain A: R.8, P.9, D.10, S.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.10 Water bridges: A:D.10, A:S.295 EDO.12: 2 residues within 4Å: Chain A: K.308, M.309 1 PLIP interactions: 1 interactions with chain A Water bridges: A:M.309

2 x 6NA: HEXANOIC ACID(Non-covalent)

6NA.3: 4 residues within 4Å: Chain A: A.201, A.205, R.257, R.261 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.201, A:A.205 Water bridges: A:R.257 Salt bridges: A:R.257, A:R.261 6NA.17: 1 residues within 4Å: Chain A: K.265 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.265

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 5 residues within 4Å: Chain A: V.54, R.56, E.76, G.150, R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.56, A:R.151 DMS.7: 3 residues within 4Å: Chain A: E.79, A.80, T.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.152 DMS.14: 3 residues within 4Å: Chain A: R.47, P.294, Q.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.47 Water bridges: A:Q.297 Salt bridges: A:E.301 DMS.15: 6 residues within 4Å: Chain A: L.193, D.196, A.197, I.217, D.221, R.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.228 Water bridges: A:D.221, A:D.221 Salt bridges: A:D.196, A:D.221

6 x CCN: ACETONITRILE(Non-functional Binders)

CCN.8: 2 residues within 4Å: Chain A: L.15, G.209 No protein-ligand interaction detected (PLIP) CCN.9: 3 residues within 4Å: Chain A: P.63, A.64, G.65 No protein-ligand interaction detected (PLIP) CCN.10: 2 residues within 4Å: Chain A: P.124, E.125 No protein-ligand interaction detected (PLIP) CCN.11: 2 residues within 4Å: Chain A: M.44, A.292 No protein-ligand interaction detected (PLIP) CCN.13: 2 residues within 4Å: Chain A: I.236, L.237 No protein-ligand interaction detected (PLIP) CCN.18: 1 residues within 4Å: Chain A: E.280 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.280

1 x D8F: (4-nitrophenyl) hexanoate(Non-covalent)

D8F.16: 12 residues within 4Å: Chain A: Y.38, G.89, G.90, G.91, S.162, A.163, L.193, V.211, L.212, F.220, H.284, S.285 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.38, A:A.163, A:L.212, A:F.220 Salt bridges: A:H.284

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.19: 1 residues within 4Å: Chain A: R.272 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.272, A:R.272, A:R.272, A:R.272 Salt bridges: A:R.272 SO4.20: 3 residues within 4Å: Chain A: R.75, E.76, S.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.75, A:E.76, A:S.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X., Microbial Hormone-sensitive lipase E53 wild type. To Be Published

Release Date

2021-07-14

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipase

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