SMTL ID : 7cjl.2 (1 other biounit)

Metallo-Beta-Lactamase VIM-2 in complex with (S)-N-(3-(2H-tetrazol-5-yl)phenyl)-3-mercapto-2-methylpropanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.85, H.148 Ligands: ZN.2, G0O.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.83, A:H.85, A:H.148 ZN.2: 6 residues within 4Å: Chain A: D.87, R.88, C.167, H.209 Ligands: ZN.1, G0O.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, A:C.167, A:H.209, H2O.4

1 x G0O: (S)-N-(3-(2H-tetrazol-5-yl)phenyl)-3-mercapto-2-methylpropanamide(Non-covalent)

G0O.3: 14 residues within 4Å: Chain A: F.31, Y.36, W.56, H.83, H.85, D.87, H.148, C.167, R.174, G.178, N.179, H.209 Ligands: ZN.1, ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.31, A:W.56, A:N.179 Hydrogen bonds: A:N.179 Water bridges: A:Y.36, A:Y.36 pi-Stacking: A:Y.36, A:H.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y.H. et al., Discovery of mercaptopropanamide-substituted aryl tetrazoles as new broad-spectrum metallo-beta-lactamase inhibitors. Rsc Adv (2020)

Release Date

2021-07-14

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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