SMTL ID : 7cjt.1 (3 other biounits)

Crystal Structure of SETDB1 Tudor domain in complexed with (R,R)-59

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x G09: 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one(Non-covalent)

G09.1: 12 residues within 4Å: Chain A: T.40, T.42, Y.98, W.105, Y.107, F.127, D.129, G.130, Y.131, W.188, E.216, R.224 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.40, A:T.42, A:Y.98, A:Y.98, A:Y.131 Hydrogen bonds: A:Y.98, A:E.216 Salt bridges: A:D.129 pi-Stacking: A:W.105 pi-Cation interactions: A:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-04-14

Peptides

Histone-lysine N-methyltransferase SETDB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Histone-lysine N-methyltransferase SETDB1

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