SMTL ID : 7ck8.1

Crystal structure of human ferritin heavy chain mutant C90S/C102S/C130S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-24-mer

Ligands

90 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: H.10, Q.11 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: S.87, D.88, D.89 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: S.87, D.88, D.89 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: Q.80, D.81 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.12: 8 residues within 4Å: Chain B: L.166, H.170 Chain E: L.166, H.170 Chain F: L.166, H.170 Chain J: L.166, H.170 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: S.87, D.88, D.89 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain C: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.19: 7 residues within 4Å: Chain C: H.170 Chain H: L.166, H.170 Chain O: H.170 Chain T: L.166, H.170 Ligands: CL.115 Ligand excluded by PLIP CL.26: 5 residues within 4Å: Chain D: R.6, Q.7, N.8, Y.9 Ligands: CL.27 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain D: Q.7, N.8 Ligands: CL.26 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: H.10, Q.11 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain D: S.87, D.88, D.89 Ligand excluded by PLIP CL.30: 1 residues within 4Å: Chain D: K.83 Ligand excluded by PLIP CL.31: 8 residues within 4Å: Chain D: L.166, H.170 Chain K: L.166, H.170 Chain M: L.166, H.170 Chain S: L.166, H.170 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain E: R.40, D.89 Chain K: F.78 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain E: S.87, D.88, D.89 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain E: Q.80, D.81 Ligand excluded by PLIP CL.45: 3 residues within 4Å: Chain F: S.87, D.88, D.89 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain F: R.153, K.154 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain F: Y.37, E.91 Ligand excluded by PLIP CL.48: 4 residues within 4Å: Chain F: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain F: H.10, Q.11 Ligand excluded by PLIP CL.53: 4 residues within 4Å: Chain G: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain G: H.10, Q.11 Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain G: S.87, D.88, D.89 Ligand excluded by PLIP CL.56: 2 residues within 4Å: Chain G: Q.80, D.81 Ligand excluded by PLIP CL.62: 5 residues within 4Å: Chain H: R.6, Q.7, N.8, Y.9 Ligands: CL.63 Ligand excluded by PLIP CL.63: 3 residues within 4Å: Chain H: Q.7, N.8 Ligands: CL.62 Ligand excluded by PLIP CL.64: 3 residues within 4Å: Chain H: S.87, D.88, D.89 Ligand excluded by PLIP CL.70: 2 residues within 4Å: Chain I: H.10, Q.11 Ligand excluded by PLIP CL.71: 4 residues within 4Å: Chain I: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.72: 7 residues within 4Å: Chain I: H.170 Chain L: L.166, H.170 Chain U: H.170 Chain X: L.166, H.170 Ligands: CL.168 Ligand excluded by PLIP CL.73: 3 residues within 4Å: Chain I: S.87, D.88, D.89 Ligand excluded by PLIP CL.74: 4 residues within 4Å: Chain I: E.91, S.92, N.95, P.158 Ligand excluded by PLIP CL.75: 2 residues within 4Å: Chain I: Q.80, D.81 Ligand excluded by PLIP CL.82: 3 residues within 4Å: Chain J: S.87, D.88, D.89 Ligand excluded by PLIP CL.83: 4 residues within 4Å: Chain J: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.84: 2 residues within 4Å: Chain J: H.10, Q.11 Ligand excluded by PLIP CL.87: 4 residues within 4Å: Chain K: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.88: 2 residues within 4Å: Chain K: H.10, Q.11 Ligand excluded by PLIP CL.89: 3 residues within 4Å: Chain K: S.87, D.88, D.89 Ligand excluded by PLIP CL.92: 3 residues within 4Å: Chain L: S.87, D.88, D.89 Ligand excluded by PLIP CL.93: 4 residues within 4Å: Chain L: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.97: 4 residues within 4Å: Chain M: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.98: 2 residues within 4Å: Chain M: H.10, Q.11 Ligand excluded by PLIP CL.99: 3 residues within 4Å: Chain M: S.87, D.88, D.89 Ligand excluded by PLIP CL.105: 3 residues within 4Å: Chain N: S.87, D.88, D.89 Ligand excluded by PLIP CL.106: 2 residues within 4Å: Chain N: Q.80, D.81 Ligand excluded by PLIP CL.107: 4 residues within 4Å: Chain N: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.108: 8 residues within 4Å: Chain N: L.166, H.170 Chain Q: L.166, H.170 Chain R: L.166, H.170 Chain V: L.166, H.170 Ligand excluded by PLIP CL.113: 3 residues within 4Å: Chain O: S.87, D.88, D.89 Ligand excluded by PLIP CL.114: 4 residues within 4Å: Chain O: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.115: 7 residues within 4Å: Chain C: H.170 Chain H: L.166, H.170 Chain O: H.170 Chain T: L.166, H.170 Ligands: CL.19 Ligand excluded by PLIP CL.122: 5 residues within 4Å: Chain P: R.6, Q.7, N.8, Y.9 Ligands: CL.123 Ligand excluded by PLIP CL.123: 3 residues within 4Å: Chain P: Q.7, N.8 Ligands: CL.122 Ligand excluded by PLIP CL.124: 2 residues within 4Å: Chain P: H.10, Q.11 Ligand excluded by PLIP CL.125: 3 residues within 4Å: Chain P: S.87, D.88, D.89 Ligand excluded by PLIP CL.126: 1 residues within 4Å: Chain P: K.83 Ligand excluded by PLIP CL.127: 8 residues within 4Å: Chain A: L.166, H.170 Chain G: L.166, H.170 Chain P: L.166, H.170 Chain W: L.166, H.170 Ligand excluded by PLIP CL.133: 3 residues within 4Å: Chain Q: R.40, D.89 Chain W: F.78 Ligand excluded by PLIP CL.134: 3 residues within 4Å: Chain Q: S.87, D.88, D.89 Ligand excluded by PLIP CL.135: 2 residues within 4Å: Chain Q: Q.80, D.81 Ligand excluded by PLIP CL.141: 3 residues within 4Å: Chain R: S.87, D.88, D.89 Ligand excluded by PLIP CL.142: 2 residues within 4Å: Chain R: R.153, K.154 Ligand excluded by PLIP CL.143: 2 residues within 4Å: Chain R: Y.37, E.91 Ligand excluded by PLIP CL.144: 4 residues within 4Å: Chain R: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.145: 2 residues within 4Å: Chain R: H.10, Q.11 Ligand excluded by PLIP CL.149: 4 residues within 4Å: Chain S: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.150: 2 residues within 4Å: Chain S: H.10, Q.11 Ligand excluded by PLIP CL.151: 3 residues within 4Å: Chain S: S.87, D.88, D.89 Ligand excluded by PLIP CL.152: 2 residues within 4Å: Chain S: Q.80, D.81 Ligand excluded by PLIP CL.158: 5 residues within 4Å: Chain T: R.6, Q.7, N.8, Y.9 Ligands: CL.159 Ligand excluded by PLIP CL.159: 3 residues within 4Å: Chain T: Q.7, N.8 Ligands: CL.158 Ligand excluded by PLIP CL.160: 3 residues within 4Å: Chain T: S.87, D.88, D.89 Ligand excluded by PLIP CL.166: 2 residues within 4Å: Chain U: H.10, Q.11 Ligand excluded by PLIP CL.167: 4 residues within 4Å: Chain U: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.168: 7 residues within 4Å: Chain I: H.170 Chain L: L.166, H.170 Chain U: H.170 Chain X: L.166, H.170 Ligands: CL.72 Ligand excluded by PLIP CL.169: 3 residues within 4Å: Chain U: S.87, D.88, D.89 Ligand excluded by PLIP CL.170: 4 residues within 4Å: Chain U: E.91, S.92, N.95, P.158 Ligand excluded by PLIP CL.171: 2 residues within 4Å: Chain U: Q.80, D.81 Ligand excluded by PLIP CL.178: 3 residues within 4Å: Chain V: S.87, D.88, D.89 Ligand excluded by PLIP CL.179: 4 residues within 4Å: Chain V: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.180: 2 residues within 4Å: Chain V: H.10, Q.11 Ligand excluded by PLIP CL.183: 4 residues within 4Å: Chain W: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP CL.184: 2 residues within 4Å: Chain W: H.10, Q.11 Ligand excluded by PLIP CL.185: 3 residues within 4Å: Chain W: S.87, D.88, D.89 Ligand excluded by PLIP CL.188: 3 residues within 4Å: Chain X: S.87, D.88, D.89 Ligand excluded by PLIP CL.189: 4 residues within 4Å: Chain X: R.6, Q.7, N.8, Y.9 Ligand excluded by PLIP

58 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.4: 3 residues within 4Å: Chain A: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.24, A:E.59, A:H.62, H2O.1, H2O.1 MG.5: 2 residues within 4Å: Chain A: Q.55, E.58 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.58, H2O.1, H2O.3, H2O.6, H2O.7 MG.6: 3 residues within 4Å: Chain A: D.128 Chain B: D.128 Chain C: D.128 No protein-ligand interaction detected (PLIP) MG.13: 3 residues within 4Å: Chain B: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.24, B:E.59, B:H.62, H2O.12, H2O.12 MG.14: 2 residues within 4Å: Chain B: Q.55, E.58 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.58, H2O.12, H2O.15, H2O.16, H2O.17 MG.20: 4 residues within 4Å: Chain C: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.24, C:E.59, C:H.62, H2O.23, H2O.23 MG.21: 2 residues within 4Å: Chain C: Q.55, E.58 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.58, H2O.23, H2O.23, H2O.26, H2O.27 MG.32: 3 residues within 4Å: Chain D: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.24, D:E.59, D:H.62, H2O.34, H2O.35 MG.33: 2 residues within 4Å: Chain D: Q.55, E.58 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:E.58, H2O.34, H2O.37, H2O.39, H2O.40 MG.40: 3 residues within 4Å: Chain E: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.24, E:E.59, E:H.62, H2O.45, H2O.45 MG.41: 2 residues within 4Å: Chain E: Q.55, E.58 5 PLIP interactions: 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:E.58, H2O.45, H2O.48, H2O.50, H2O.50 MG.50: 3 residues within 4Å: Chain F: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.24, F:E.59, F:H.62, H2O.56, H2O.56 MG.51: 2 residues within 4Å: Chain F: Q.55, E.58 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:E.58, H2O.55, H2O.58, H2O.60, H2O.62 MG.57: 4 residues within 4Å: Chain G: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.24, G:E.59, G:H.62, H2O.66, H2O.67 MG.58: 3 residues within 4Å: Chain G: D.128 Chain J: D.128 Chain X: D.128 No protein-ligand interaction detected (PLIP) MG.59: 2 residues within 4Å: Chain G: Q.55, E.58 4 PLIP interactions: 1 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:E.58, H2O.66, H2O.70, H2O.70 MG.65: 3 residues within 4Å: Chain H: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.24, H:E.59, H:H.62, H2O.77, H2O.77 MG.66: 3 residues within 4Å: Chain H: D.128 Chain R: D.128 Chain W: D.128 No protein-ligand interaction detected (PLIP) MG.67: 1 residues within 4Å: Chain H: N.122 No protein-ligand interaction detected (PLIP) MG.68: 2 residues within 4Å: Chain H: Q.55, E.58 5 PLIP interactions: 1 interactions with chain H, 4 Ligand-Water interactions Metal complexes: H:E.58, H2O.77, H2O.80, H2O.81, H2O.81 MG.76: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.77: 4 residues within 4Å: Chain I: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.24, I:E.59, I:H.62, H2O.88, H2O.88 MG.78: 2 residues within 4Å: Chain I: Q.55, E.58 5 PLIP interactions: 1 interactions with chain I, 4 Ligand-Water interactions Metal complexes: I:E.58, H2O.88, H2O.91, H2O.91, H2O.92 MG.85: 3 residues within 4Å: Chain J: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.24, J:E.59, J:H.62, H2O.99, H2O.99 MG.86: 2 residues within 4Å: Chain J: Q.55, E.58 5 PLIP interactions: 1 interactions with chain J, 4 Ligand-Water interactions Metal complexes: J:E.58, H2O.99, H2O.101, H2O.103, H2O.105 MG.90: 4 residues within 4Å: Chain K: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.24, K:E.59, K:H.62, H2O.110, H2O.110 MG.91: 2 residues within 4Å: Chain K: Q.55, E.58 4 PLIP interactions: 1 interactions with chain K, 3 Ligand-Water interactions Metal complexes: K:E.58, H2O.110, H2O.113, H2O.114 MG.94: 3 residues within 4Å: Chain L: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.24, L:E.59, L:H.62, H2O.121, H2O.121 MG.95: 2 residues within 4Å: Chain L: Q.55, E.58 5 PLIP interactions: 1 interactions with chain L, 4 Ligand-Water interactions Metal complexes: L:E.58, H2O.120, H2O.120, H2O.123, H2O.125 MG.100: 3 residues within 4Å: Chain M: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.24, M:E.59, M:H.62, H2O.132, H2O.132 MG.101: 2 residues within 4Å: Chain M: Q.55, E.58 5 PLIP interactions: 1 interactions with chain M, 4 Ligand-Water interactions Metal complexes: M:E.58, H2O.131, H2O.134, H2O.136, H2O.137 MG.102: 3 residues within 4Å: Chain M: D.128 Chain N: D.128 Chain O: D.128 No protein-ligand interaction detected (PLIP) MG.109: 3 residues within 4Å: Chain N: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.24, N:E.59, N:H.62, H2O.143, H2O.143 MG.110: 2 residues within 4Å: Chain N: Q.55, E.58 5 PLIP interactions: 1 interactions with chain N, 4 Ligand-Water interactions Metal complexes: N:E.58, H2O.142, H2O.146, H2O.147, H2O.147 MG.116: 4 residues within 4Å: Chain O: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.24, O:E.59, O:H.62, H2O.154, H2O.154 MG.117: 2 residues within 4Å: Chain O: Q.55, E.58 5 PLIP interactions: 1 interactions with chain O, 4 Ligand-Water interactions Metal complexes: O:E.58, H2O.153, H2O.154, H2O.157, H2O.157 MG.128: 3 residues within 4Å: Chain P: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.24, P:E.59, P:H.62, H2O.165, H2O.165 MG.129: 2 residues within 4Å: Chain P: Q.55, E.58 5 PLIP interactions: 1 interactions with chain P, 4 Ligand-Water interactions Metal complexes: P:E.58, H2O.165, H2O.167, H2O.170, H2O.170 MG.136: 3 residues within 4Å: Chain Q: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.24, Q:E.59, Q:H.62, H2O.176, H2O.176 MG.137: 2 residues within 4Å: Chain Q: Q.55, E.58 5 PLIP interactions: 1 interactions with chain Q, 4 Ligand-Water interactions Metal complexes: Q:E.58, H2O.175, H2O.179, H2O.180, H2O.180 MG.146: 3 residues within 4Å: Chain R: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.24, R:E.59, R:H.62, H2O.186, H2O.187 MG.147: 2 residues within 4Å: Chain R: Q.55, E.58 5 PLIP interactions: 1 interactions with chain R, 4 Ligand-Water interactions Metal complexes: R:E.58, H2O.186, H2O.189, H2O.190, H2O.192 MG.153: 4 residues within 4Å: Chain S: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.24, S:E.59, S:H.62, H2O.197, H2O.197 MG.154: 3 residues within 4Å: Chain L: D.128 Chain S: D.128 Chain V: D.128 No protein-ligand interaction detected (PLIP) MG.155: 2 residues within 4Å: Chain S: Q.55, E.58 4 PLIP interactions: 1 interactions with chain S, 3 Ligand-Water interactions Metal complexes: S:E.58, H2O.197, H2O.200, H2O.201 MG.161: 3 residues within 4Å: Chain T: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.24, T:E.59, T:H.62, H2O.208, H2O.208 MG.162: 3 residues within 4Å: Chain F: D.128 Chain K: D.128 Chain T: D.128 No protein-ligand interaction detected (PLIP) MG.163: 1 residues within 4Å: Chain T: N.122 No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain T: Q.55, E.58 5 PLIP interactions: 1 interactions with chain T, 4 Ligand-Water interactions Metal complexes: T:E.58, H2O.207, H2O.211, H2O.211, H2O.212 MG.172: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.173: 4 residues within 4Å: Chain U: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.24, U:E.59, U:H.62, H2O.219, H2O.219 MG.174: 2 residues within 4Å: Chain U: Q.55, E.58 5 PLIP interactions: 1 interactions with chain U, 4 Ligand-Water interactions Metal complexes: U:E.58, H2O.219, H2O.222, H2O.222, H2O.223 MG.181: 3 residues within 4Å: Chain V: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.24, V:E.59, V:H.62, H2O.230, H2O.230 MG.182: 2 residues within 4Å: Chain V: Q.55, E.58 5 PLIP interactions: 1 interactions with chain V, 4 Ligand-Water interactions Metal complexes: V:E.58, H2O.229, H2O.232, H2O.234, H2O.235 MG.186: 4 residues within 4Å: Chain W: E.24, E.59, H.62, Q.138 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.24, W:E.59, W:H.62, H2O.240, H2O.240 MG.187: 2 residues within 4Å: Chain W: Q.55, E.58 4 PLIP interactions: 1 interactions with chain W, 3 Ligand-Water interactions Metal complexes: W:E.58, H2O.240, H2O.244, H2O.244 MG.190: 3 residues within 4Å: Chain X: E.24, E.59, H.62 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.24, X:E.59, X:H.62, H2O.251, H2O.251 MG.191: 2 residues within 4Å: Chain X: Q.55, E.58 5 PLIP interactions: 1 interactions with chain X, 4 Ligand-Water interactions Metal complexes: X:E.58, H2O.251, H2O.251, H2O.253, H2O.255

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: S.28, Y.29, R.60 Chain H: S.28, R.60 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain H Hydrogen bonds: A:S.28, A:R.60, H:R.60 GOL.15: 5 residues within 4Å: Chain B: S.28, R.60 Chain G: S.28, L.32, R.60 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain G Hydrogen bonds: B:R.60, G:S.28, G:R.60 GOL.22: 4 residues within 4Å: Chain C: R.60 Chain F: S.28, Y.29, R.60 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:R.60, F:R.60, C:R.60 GOL.35: 5 residues within 4Å: Chain D: S.28, R.60 Chain L: S.28, Y.29, R.60 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain D Hydrogen bonds: L:S.28, L:R.60, D:R.60 GOL.42: 4 residues within 4Å: Chain E: S.28, R.60 Chain K: S.28, R.60 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain E Hydrogen bonds: K:S.28, K:R.60, E:R.60, E:R.60 GOL.79: 5 residues within 4Å: Chain I: S.28, R.60, I.82 Chain J: S.28, R.60 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain I Hydrogen bonds: J:R.60, J:R.60, I:R.60 GOL.103: 5 residues within 4Å: Chain M: S.28, Y.29, R.60 Chain T: S.28, R.60 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain M Hydrogen bonds: T:R.60, M:S.28, M:R.60 GOL.111: 5 residues within 4Å: Chain N: S.28, R.60 Chain S: S.28, L.32, R.60 3 PLIP interactions: 2 interactions with chain S, 1 interactions with chain N Hydrogen bonds: S:S.28, S:R.60, N:R.60 GOL.118: 4 residues within 4Å: Chain O: R.60 Chain R: S.28, Y.29, R.60 3 PLIP interactions: 2 interactions with chain R, 1 interactions with chain O Hydrogen bonds: R:R.60, R:R.60, O:R.60 GOL.131: 5 residues within 4Å: Chain P: S.28, R.60 Chain X: S.28, Y.29, R.60 3 PLIP interactions: 2 interactions with chain X, 1 interactions with chain P Hydrogen bonds: X:S.28, X:R.60, P:R.60 GOL.138: 4 residues within 4Å: Chain Q: S.28, R.60 Chain W: S.28, R.60 4 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain W Hydrogen bonds: Q:R.60, Q:R.60, W:S.28, W:R.60 GOL.175: 5 residues within 4Å: Chain U: S.28, R.60, I.82 Chain V: S.28, R.60 3 PLIP interactions: 1 interactions with chain U, 2 interactions with chain V Hydrogen bonds: U:R.60, V:R.60, V:R.60

30 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.8: 3 residues within 4Å: Chain A: H.102, L.103, N.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.102, A:N.106 Water bridges: A:L.103 OXY.16: 5 residues within 4Å: Chain B: S.160, G.161, L.162 Chain J: K.154, M.155 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.161, B:L.162 OXY.23: 2 residues within 4Å: Chain C: Q.11, E.14 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.11 Water bridges: C:R.6, C:R.6 OXY.24: 3 residues within 4Å: Chain C: S.3, R.76 Chain F: D.42 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:R.40, C:R.76 OXY.25: 2 residues within 4Å: Chain C: T.119, N.122 2 PLIP interactions: 2 interactions with chain C Water bridges: C:N.122, C:N.122 OXY.36: 5 residues within 4Å: Chain D: S.160, G.161, L.162 Chain S: K.154, M.155 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.161, D:L.162 OXY.43: 5 residues within 4Å: Chain E: S.160, G.161, L.162 Chain F: K.154, M.155 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.161, E:L.162 OXY.44: 3 residues within 4Å: Chain E: S.3, R.76 Chain K: D.42 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.76 OXY.52: 3 residues within 4Å: Chain F: H.102, L.103, N.106 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.106 Water bridges: F:L.103 OXY.60: 5 residues within 4Å: Chain A: K.154, M.155 Chain G: S.160, G.161, L.162 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:G.161, G:L.162 OXY.61: 3 residues within 4Å: Chain G: H.102, L.103, N.106 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:N.106 Water bridges: G:L.103 OXY.69: 4 residues within 4Å: Chain A: D.42 Chain H: S.1, S.3, R.76 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain H Hydrogen bonds: A:R.40, H:R.76, H:R.76 Water bridges: A:D.42 OXY.80: 2 residues within 4Å: Chain I: T.119, N.122 No protein-ligand interaction detected (PLIP) OXY.81: 3 residues within 4Å: Chain I: H.102, L.103, N.106 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:N.106 Water bridges: I:L.103 OXY.96: 3 residues within 4Å: Chain L: H.102, L.103, N.106 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:N.106 Water bridges: L:L.103, L:L.103 OXY.104: 3 residues within 4Å: Chain M: H.102, L.103, N.106 3 PLIP interactions: 3 interactions with chain M Hydrogen bonds: M:N.106 Water bridges: M:S.99, M:L.103 OXY.112: 5 residues within 4Å: Chain N: S.160, G.161, L.162 Chain V: K.154, M.155 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:G.161, N:L.162 OXY.119: 2 residues within 4Å: Chain O: Q.11, E.14 3 PLIP interactions: 3 interactions with chain O Hydrogen bonds: O:Q.11 Water bridges: O:R.6, O:R.6 OXY.120: 3 residues within 4Å: Chain O: S.3, R.76 Chain R: D.42 3 PLIP interactions: 1 interactions with chain O, 2 interactions with chain R Hydrogen bonds: O:R.76, R:R.40 Water bridges: R:D.42 OXY.121: 2 residues within 4Å: Chain O: T.119, N.122 2 PLIP interactions: 2 interactions with chain O Water bridges: O:N.122, O:N.122 OXY.132: 5 residues within 4Å: Chain G: K.154, M.155 Chain P: S.160, G.161, L.162 2 PLIP interactions: 2 interactions with chain P Hydrogen bonds: P:G.161, P:L.162 OXY.139: 5 residues within 4Å: Chain Q: S.160, G.161, L.162 Chain R: K.154, M.155 2 PLIP interactions: 2 interactions with chain Q Hydrogen bonds: Q:G.161, Q:L.162 OXY.140: 3 residues within 4Å: Chain Q: S.3, R.76 Chain W: D.42 2 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain W Hydrogen bonds: Q:R.76 Water bridges: W:D.42 OXY.148: 3 residues within 4Å: Chain R: H.102, L.103, N.106 3 PLIP interactions: 3 interactions with chain R Hydrogen bonds: R:H.102, R:N.106 Water bridges: R:L.103 OXY.156: 5 residues within 4Å: Chain M: K.154, M.155 Chain S: S.160, G.161, L.162 2 PLIP interactions: 2 interactions with chain S Hydrogen bonds: S:G.161, S:L.162 OXY.157: 3 residues within 4Å: Chain S: H.102, L.103, N.106 2 PLIP interactions: 2 interactions with chain S Hydrogen bonds: S:N.106 Water bridges: S:L.103 OXY.165: 4 residues within 4Å: Chain M: D.42 Chain T: S.1, S.3, R.76 3 PLIP interactions: 2 interactions with chain T, 1 interactions with chain M Hydrogen bonds: T:R.76, T:R.76, M:R.40 OXY.176: 2 residues within 4Å: Chain U: T.119, N.122 No protein-ligand interaction detected (PLIP) OXY.177: 3 residues within 4Å: Chain U: H.102, L.103, N.106 2 PLIP interactions: 2 interactions with chain U Hydrogen bonds: U:N.106 Water bridges: U:L.103 OXY.192: 3 residues within 4Å: Chain X: H.102, L.103, N.106 3 PLIP interactions: 3 interactions with chain X Hydrogen bonds: X:N.106 Water bridges: X:L.103, X:L.103

2 x FE: FE (III) ION(Non-covalent)

FE.34: 3 residues within 4Å: Chain D: D.128 Chain E: D.128 Chain I: D.128 No protein-ligand interaction detected (PLIP) FE.130: 3 residues within 4Å: Chain P: D.128 Chain Q: D.128 Chain U: D.128 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, B. et al., A natural drug entry channel in the ferritin nanocage. Nano Today (2020)

Release Date

2021-05-26

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

T
H

U
I

V
J

W
K

X
L

Ferritin heavy chain