SMTL ID : 7cka.1

The structure of Glycine max (Soybean) Heme oxygenase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 5 residues within 4Å: Chain A: H.83, P.84, P.136, Q.137, E.202 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.137 Water bridges: A:S.85, A:S.85, A:S.85 Salt bridges: A:H.83, A:H.83

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 22 residues within 4Å: Chain A: R.23, A.26, M.27, H.30, Q.34, A.35, E.46, V.50, W.53, Y.144, N.145, F.148, A.149, A.152, G.153, M.156, I.157, R.188, S.213, F.214, S.217, L.221 21 PLIP interactions: 20 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:A.26, A:Q.34, A:A.35, A:V.50, A:W.53, A:Y.144, A:N.145, A:F.148, A:I.157, A:F.214, A:F.214, A:F.214, A:L.221 Hydrogen bonds: A:Y.144 Water bridges: A:R.188, A:R.188 Salt bridges: A:R.23, A:R.23, A:R.188 Metal complexes: A:H.30, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tohda, R. et al., Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin. J.Biol.Chem. (2020)

Release Date

2020-12-30

Peptides

Heme oxygenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heme oxygenase 1