SMTL ID : 7clt.1

Crystal structure of the EFhd1/Swiprosin-2, a mitochondrial actin-binding protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.41, D.45, F.47, E.52 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:F.47, A:E.52, A:E.52, H2O.1 CA.2: 6 residues within 4Å: Chain A: D.77, D.79, D.81, K.83, E.88 Ligands: ZN.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.77, A:D.79, A:D.81, A:K.83, H2O.1

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: H.94, E.100 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.94, A:E.100, A:E.100 ZN.4: 3 residues within 4Å: Chain A: D.79, D.81 Ligands: CA.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.79, A:D.81, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: F.16, E.21, F.22, E.78, R.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:R.87, A:R.87 Water bridges: A:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mun, S.A. et al., Structural and Biochemical Characterization of EFhd1/Swiprosin-2, an Actin-Binding Protein in Mitochondria. Front Cell Dev Biol (2020)

Release Date

2021-01-06

Peptides

EF-hand domain-containing protein D1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EF-hand domain-containing protein D1