SMTL ID : 7cm7.1

NAD+-bound Sarm1 E642A in the self-inhibited state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 16 residues within 4Å: Chain A: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.110, A:Q.150, A:L.152, A:L.152, A:H.190, A:G.321 Salt bridges: A:R.110, A:R.157, A:R.157, A:K.193, A:K.193 pi-Stacking: A:W.103, A:W.103 NAD.2: 16 residues within 4Å: Chain B: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:R.110, B:Q.150, B:L.152, B:L.152, B:A.154, B:H.190, B:G.321 Salt bridges: B:R.110, B:R.157, B:R.157, B:K.193, B:K.193 pi-Stacking: B:W.103, B:W.103 NAD.3: 16 residues within 4Å: Chain C: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:R.110, C:Q.150, C:L.152, C:L.152, C:H.190, C:G.321 Salt bridges: C:R.110, C:R.157, C:R.157, C:K.193, C:K.193 pi-Stacking: C:W.103, C:W.103 NAD.4: 16 residues within 4Å: Chain D: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:R.110, D:Q.150, D:L.152, D:L.152, D:H.190, D:G.321 Salt bridges: D:R.110, D:R.157, D:R.157, D:K.193, D:K.193 pi-Stacking: D:W.103, D:W.103 NAD.5: 16 residues within 4Å: Chain E: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:R.110, E:Q.150, E:L.152, E:L.152, E:H.190, E:G.321 Salt bridges: E:R.110, E:R.157, E:R.157, E:K.193, E:K.193 pi-Stacking: E:W.103, E:W.103 NAD.6: 16 residues within 4Å: Chain F: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:R.110, F:Q.150, F:L.152, F:L.152, F:H.190, F:G.321 Salt bridges: F:R.110, F:R.157, F:R.157, F:K.193, F:K.193 pi-Stacking: F:W.103, F:W.103 NAD.7: 16 residues within 4Å: Chain G: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:R.110, G:Q.150, G:L.152, G:L.152, G:H.190, G:G.321 Salt bridges: G:R.110, G:R.157, G:R.157, G:K.193, G:K.193 pi-Stacking: G:W.103, G:W.103 NAD.8: 16 residues within 4Å: Chain H: W.103, R.110, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, G.321, R.322, G.323, P.324, K.356, K.361 14 PLIP interactions: 14 interactions with chain H Hydrogen bonds: H:R.110, H:Q.150, H:L.152, H:L.152, H:A.154, H:H.190, H:G.321 Salt bridges: H:R.110, H:R.157, H:R.157, H:K.193, H:K.193 pi-Stacking: H:W.103, H:W.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., The NAD + -mediated self-inhibition mechanism of pro-neurodegenerative SARM1. Nature (2020)

Release Date

2020-10-21

Peptides

NAD(+) hydrolase SARM1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

NAD(+) hydrolase SARM1