SMTL ID : 7cmd.3 (3 other biounits)

Crystal structure of the SARS-CoV-2 PLpro with GRL0617

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x TTT: 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide(Non-covalent)

TTT.1: 17 residues within 4Å: Chain A: K.158, L.163, G.164, D.165, E.168, M.209, P.248, P.249, Y.265, G.267, N.268, Y.269, Q.270, C.271, G.272, Y.274, T.302 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.163, A:D.165, A:P.248, A:P.249, A:Y.265, A:Y.265, A:Q.270 Hydrogen bonds: A:D.165, A:Y.269, A:Q.270, A:Q.270 pi-Stacking: A:Y.269, A:Y.269, A:Y.269

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: C.190, T.192, C.193 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Crystal structure of SARS-CoV-2 papain-like protease. Acta Pharm Sin B (2021)

Release Date

2020-09-02

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Non-structural protein 3

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