SMTL ID : 7cmf.1

Crystal structure of human P-cadherin REC12 (monomer) in complex with 2-(5-chloro-2-methyl-1H-indol-3-yl)ethan-1-amine (inhibitor)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.12, E.70, D.101, Q.102, D.104, D.137 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.12, A:E.70, A:D.101, A:D.104, A:D.137 CA.2: 6 residues within 4Å: Chain A: N.103, H.105, D.135, D.137, N.144, D.196 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.105, A:D.135, A:D.135, A:D.137, A:N.144 CA.3: 5 residues within 4Å: Chain A: E.12, N.13, D.68, E.70, D.104 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.12, A:D.68, A:E.70, A:D.104, H2O.1 CA.4: 1 residues within 4Å: Chain A: D.200 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.200

1 x G60: 2-(5-chloro-2-methyl-1H-indol-3-yl)ethan-1-amine(Non-covalent)

G60.5: 6 residues within 4Å: Chain A: R.69, V.99, T.100, D.101, D.138, Y.141 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.141 Hydrogen bonds: A:R.69, A:R.69, A:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Senoo, A. et al., Regulation of cadherin dimerization by chemical fragments as a trigger to inhibit cell adhesion. Commun Biol (2021)

Release Date

2021-09-15

Peptides

Cadherin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-3

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