SMTL ID : 7cne.1

Crystal Structure of Sphingomyelinase C from Streptomyces griseocarneus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 12 residues within 4Å: Chain A: K.91, S.93, T.95, I.117, F.118, A.121, D.125, W.126, W.127, S.128, N.129, K.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.93, A:S.93, A:D.125

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 10 residues within 4Å: Chain A: N.16, E.53, H.150, D.194, N.196, F.226, R.237, Y.238, L.246, H.290 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.226 Hydrogen bonds: A:N.16, A:N.196 Water bridges: A:R.237, A:R.237, A:R.237 Salt bridges: A:H.150, A:R.237, A:H.290, A:H.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujisawa, I. et al., Structural basis for the high thermal stability and optimum pH of sphingomyelinase C from Streptomyces griseocarneus. J.Biosci.Bioeng. (2021)

Release Date

2020-10-28

Peptides

Sphingomyelinase C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sphingomyelinase C