SMTL ID : 7co5.1

HtrA-type protease AlgW with decapeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-6-6-mer

Ligands

6 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 5 residues within 4Å: Chain B: Y.212, R.279, N.343, A.346, R.347 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.279, B:R.279, B:R.347 IMD.2: 5 residues within 4Å: Chain D: Y.212, L.263, R.279, N.343, A.346 2 PLIP interactions: 2 interactions with chain D pi-Cation interactions: D:R.279, D:R.347 IMD.3: 6 residues within 4Å: Chain F: Y.212, L.263, R.279, N.343, A.346, R.347 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:R.279, F:N.343, F:R.347 Water bridges: F:R.347 IMD.4: 5 residues within 4Å: Chain H: E.266, R.279, N.343, A.346, R.347 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:R.279, H:R.279, H:N.343, H:R.347 pi-Stacking: H:Y.212 IMD.5: 5 residues within 4Å: Chain J: Y.212, L.263, R.279, N.343, R.347 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:R.279, J:R.279, J:N.343 pi-Cation interactions: J:R.279 IMD.6: 4 residues within 4Å: Chain L: Y.212, R.279, A.346, R.347 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:R.279, L:R.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Molecular Basis of the Versatile Regulatory Mechanism of HtrA-Type Protease AlgW from Pseudomonas aeruginosa. Mbio (2021)

Release Date

2021-03-10

Peptides

decapeptide SVRDELRWVF: ACEGIK
AlgW protein: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
A

E
C

G
E

I
I

K
K

B
H

D
B

F
D

H
F

J
J

L
L

decapeptide SVRDELRWVF

AlgW protein

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