SMTL ID : 7coq.1

Hexameric Ring Complex of Engineered V1-ATPase bound to AMP-PNP: A3(De)3_(ANP)1cat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.44 Å

Oligo State

hetero-3-3-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain C: T.242, E.264, R.265, E.268 Ligands: ANP.2 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.242, C:E.264, C:E.268

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain C: P.236, G.238, A.239, G.240, K.241, T.242, V.243, E.264, R.265, S.394, F.428, P.429, N.507, F.509 Chain F: Y.321, L.348, R.350 Ligands: MG.1 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain F Hydrogen bonds: C:G.238, C:K.241, C:K.241, C:T.242, C:T.242, C:V.243, C:R.265, C:S.394, C:S.394, C:N.507, F:R.350, F:R.350 Salt bridges: F:R.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kosugi, T. et al., De Novo Design of Allosteric Control into Rotary Motor V1-ATPase by Restoring Lost Function. To Be Published

Release Date

2021-08-11

Peptides

V-type sodium ATPase catalytic subunit A: ABC
V-type sodium ATPase subunit B: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

V-type sodium ATPase catalytic subunit A

V-type sodium ATPase subunit B

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