SMTL ID : 7cov.1

Potato D-enzyme, native (substrate free)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: N.232 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain B: N.232 No protein-ligand interaction detected (PLIP)

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.136, H.472, D.473, N.537, W.546 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: P.295, I.296, Y.297, W.338, D.373, H.374 Ligand excluded by PLIP GOL.4: 4 residues within 4Å: Chain A: L.422, G.423, F.446, H.456 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain A: R.128, G.129, D.132 Ligand excluded by PLIP GOL.6: 4 residues within 4Å: Chain A: T.233, I.234, S.235, D.238 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: D.220, Y.223, R.246, L.251, W.306 Ligands: GOL.9 Ligand excluded by PLIP GOL.8: 8 residues within 4Å: Chain A: R.478, S.505, R.506, I.509, D.526, V.527, G.529, K.565 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: S.215, S.216, E.219, D.220 Ligands: GOL.7 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain B: Y.136, H.472, D.473, N.537, W.546 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain B: P.295, I.296, Y.297, W.338, D.373, H.374 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain B: L.422, G.423, F.446, H.456 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain B: R.128, G.129, D.132 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain B: T.233, I.234, S.235, D.238 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain B: D.220, Y.223, R.246, L.251, W.306 Ligands: GOL.18 Ligand excluded by PLIP GOL.17: 8 residues within 4Å: Chain B: R.478, S.505, R.506, I.509, D.526, V.527, G.529, K.565 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain B: S.215, S.216, E.219, D.220 Ligands: GOL.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imamura, K. et al., Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci. (2020)

Release Date

2020-08-26

Peptides

4-alpha-glucanotransferase, chloroplastic/amyloplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-alpha-glucanotransferase, chloroplastic/amyloplastic