SMTL ID : 7cp0.2 (2 other biounits)

Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.125, E.168, W.295, H.296 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.125, A:E.168, A:E.168, A:H.296, H2O.7

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.183, R.278 9 PLIP interactions: 9 interactions with chain A Water bridges: A:R.183, A:R.183, A:R.278, A:R.278, A:R.278, A:R.279, A:R.279 Salt bridges: A:R.183, A:R.278

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: K.6, N.7, N.229, R.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.6, A:R.232 Water bridges: A:P.228, A:N.229 EDO.4: 4 residues within 4Å: Chain A: Y.265, S.289, P.290, F.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.265, A:S.289, A:F.291 EDO.5: 4 residues within 4Å: Chain A: L.204, H.205, R.279, G.280 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.280 Water bridges: A:S.202, A:S.202 EDO.6: 7 residues within 4Å: Chain A: T.92, P.95, H.100, Q.160, M.189, H.194, Q.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.100, A:Q.160, A:Q.203 EDO.7: 4 residues within 4Å: Chain A: K.110, L.171, W.173, H.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.110, A:L.171, A:W.173 EDO.8: 6 residues within 4Å: Chain A: E.71, I.90, L.185, K.188, M.189, Q.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.192, A:Q.203, A:Q.203 EDO.9: 5 residues within 4Å: Chain A: N.94, A.97, L.147, D.156, L.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.156, A:L.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dileep, K.V. et al., Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors. Int.J.Biol.Macromol. (2020)

Release Date

2021-01-13

Peptides

Glutaminyl-peptide cyclotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glutaminyl-peptide cyclotransferase

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