SMTL ID : 7cq7.1

Structure of the human CLCN7-OSTM1 complex with ADP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.263, K.267 Chain B: M.148, R.151, Q.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.148, B:Q.153 NAG-NAG.2: 6 residues within 4Å: Chain A: M.148, D.150, R.151, Q.153 Chain B: N.263, K.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.148, A:Q.153

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)(Non-covalent)

ADP.3: 12 residues within 4Å: Chain C: S.116, S.652, P.654, V.655, T.656, N.677, H.678, N.679, R.787, H.788, L.801, T.803 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:S.116, C:S.116, C:S.116, C:S.652, C:T.656, C:T.656, C:N.677, C:N.679, C:N.679, C:T.803, C:T.803, C:T.803 Salt bridges: C:H.678, C:R.787, C:K.805, C:K.805 pi-Cation interactions: C:H.678 ADP.5: 13 residues within 4Å: Chain D: E.115, S.116, S.652, P.654, T.656, N.677, H.678, N.679, G.680, R.787, T.803, K.805, D.806 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:S.116, D:S.116, D:S.652, D:T.656, D:H.678, D:N.679, D:G.680, D:R.787, D:T.803, D:D.806 Salt bridges: D:R.787, D:K.805, D:K.805 pi-Stacking: D:H.678, D:H.678

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain C: G.265, E.267, G.268, G.532, V.533, F.534, I.535 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain D: S.224, I.226, G.268, G.532, V.533, F.534, Y.622 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain D: G.265, G.532, V.533, F.534, I.535, P.536 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.H. et al., Structure of the human CLCN7-OSTM1 complex with ADP. To Be Published

Release Date

2020-11-11

Peptides

Osteopetrosis-associated transmembrane protein 1: AB
H(+)/Cl(-) exchange transporter 7: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Osteopetrosis-associated transmembrane protein 1

H(+)/Cl(-) exchange transporter 7

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