- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 7 x SEY: selenourea(Non-covalent)
- 8 x 79M: (2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate(Non-covalent)
79M.2: 3 residues within 4Å:- Chain A: S.120, F.124
- Ligands: 79M.20
No protein-ligand interaction detected (PLIP)79M.15: 16 residues within 4Å:- Chain A: T.42, F.57, K.105, V.107, L.111, V.114, S.125, F.126, W.129, V.139, S.143, A.150, A.167, I.170, H.178
- Ligands: 79M.17
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:F.57, A:F.57, A:V.107, A:L.111, A:V.114, A:F.126, A:W.129, A:W.129, A:V.139, A:A.150, A:A.167, A:I.170
- Hydrogen bonds: A:K.105, A:S.143
- Water bridges: A:T.42, A:K.105, A:N.181, A:N.181
79M.16: 4 residues within 4Å:- Chain A: Y.95, A.172, L.173, Y.176
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.172, A:Y.176
79M.17: 12 residues within 4Å:- Chain A: A.41, T.42, T.45, R.46, G.53, V.54, F.57, L.111, L.123, F.126
- Ligands: SO4.13, 79M.15
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.41, A:T.45, A:V.54, A:F.57, A:L.111, A:F.126, A:F.126
79M.18: 10 residues within 4Å:- Chain A: F.151, A.167, I.168, G.171, A.172, I.175, Y.176, R.179, E.180, N.183
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.151, A:A.172, A:Y.176
- Hydrogen bonds: A:N.183
79M.19: 10 residues within 4Å:- Chain A: F.58, F.61, F.65, L.69, V.72, K.73, F.115, A.116, V.117, P.119
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.58, A:F.61, A:F.65, A:L.69, A:F.115
- Salt bridges: A:K.73
79M.20: 11 residues within 4Å:- Chain A: S.118, S.120, V.121, F.124, I.132, T.145, S.149, F.153, A.157, Y.159
- Ligands: 79M.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.132, A:T.145, A:F.153
- Hydrogen bonds: A:S.118, A:Y.159, A:Y.159
- Water bridges: A:S.120
79M.21: 6 residues within 4Å:- Chain A: W.80, F.151, F.155, L.164, F.165, I.168
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.80, A:F.155, A:L.164, A:F.165, A:I.168
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 7 residues within 4Å:- Chain A: S.36, N.38, T.42, N.43, R.46, G.104, K.105
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:S.36, A:S.36, A:N.38, A:N.43, A:K.105, A:R.177
- Water bridges: A:T.42, A:T.42, A:T.42
- Salt bridges: A:R.46, A:K.105
SO4.10: 10 residues within 4Å:- Chain A: G.40, A.41, D.60, H.93, G.104, K.105, G.106, V.107, A.108, T.109
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:A.41, A:D.60, A:G.106, A:V.107, A:A.108, A:T.109
- Water bridges: A:T.42, A:T.42, A:K.105, A:K.105, A:K.105, A:K.105
- Salt bridges: A:H.93
SO4.11: 3 residues within 4Å:- Chain A: K.102, R.177, R.179
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.38
- Water bridges: A:R.177, A:R.177, A:R.177, A:R.179
- Salt bridges: A:K.102, A:R.177, A:R.179
SO4.12: 4 residues within 4Å:- Chain A: A.157, G.158, Y.159, P.160
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.157
SO4.13: 3 residues within 4Å:- Chain A: R.46
- Ligands: SEY.5, 79M.17
4 PLIP interactions:4 interactions with chain A- Water bridges: A:N.181, A:N.181, A:H.191
- Salt bridges: A:R.46
SO4.14: 4 residues within 4Å:- Chain A: K.25, G.28, V.29, D.30
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, Z.P. et al., Selenourea for experimental phasing of membrane protein crystals grown in lipid cubic phase. Crystals (2022)
- Release Date
- 2021-08-11
- Peptides
- Glycerol-3-phosphate acyltransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 7 x SEY: selenourea(Non-covalent)
- 8 x 79M: (2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, Z.P. et al., Selenourea for experimental phasing of membrane protein crystals grown in lipid cubic phase. Crystals (2022)
- Release Date
- 2021-08-11
- Peptides
- Glycerol-3-phosphate acyltransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B - Membrane
-
We predict this structure to be a membrane protein.