SMTL ID : 7cqs.1

Complex structure of HPPD with Topramezone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.192, H.274, E.360 Ligands: GJL.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.192, A:H.274, A:E.360, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.192, H.274, E.360 Ligands: GJL.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.192, B:H.274, B:E.360, H2O.10

2 x GJL: 4-[3-(4,5-dihydro-1,2-oxazol-3-yl)-2-methyl-4-methylsulfonyl-phenyl]carbonyl-2-methyl-1~{H}-pyrazol-3-one(Non-covalent)

GJL.2: 17 residues within 4Å: Chain A: H.192, V.194, V.235, P.246, H.274, M.301, L.334, Q.345, F.347, F.358, E.360, F.385, G.386, N.389, F.390, L.393 Ligands: CO.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.347, A:F.347, A:F.347, A:F.358, A:F.385 Water bridges: A:Q.345 GJL.4: 17 residues within 4Å: Chain B: H.192, V.194, V.235, P.246, H.274, M.301, L.334, Q.345, F.347, F.358, E.360, F.385, G.386, N.389, F.390, L.393 Ligands: CO.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.347, B:F.347, B:F.347, B:F.358, B:F.385 Water bridges: B:Q.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules. Adv Agrochem (2022)

Release Date

2022-03-16

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase