SMTL ID : 7crc.1

Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.258, L.259, V.260, M.262, P.289, G.290, I.291, G.292, K.293, T.294, T.295, I.427, P.457, L.458, K.461 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.260, A:V.260, A:G.290, A:I.291, A:G.292, A:K.293, A:T.294, A:T.295, A:K.461 Salt bridges: A:K.293 ADP.2: 15 residues within 4Å: Chain A: E.328 Chain B: L.259, V.260, M.262, P.289, G.290, I.291, G.292, K.293, T.294, T.295, I.427, P.457, L.458, K.461 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.260, B:V.260, B:G.290, B:G.292, B:K.293, B:T.294, B:T.295, A:E.328 Salt bridges: B:K.293 ADP.4: 14 residues within 4Å: Chain C: L.259, V.260, M.262, P.289, G.290, I.291, G.292, K.293, T.294, T.295, I.427, P.457, L.458, K.461 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:V.260, C:V.260, C:G.290, C:I.291, C:G.292, C:K.293, C:T.294, C:T.295, C:K.461 Salt bridges: C:K.293 ADP.5: 14 residues within 4Å: Chain H: L.259, V.260, M.262, P.289, G.290, I.291, G.292, K.293, T.294, T.295, I.427, P.457, L.458, K.461 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:V.260, H:V.260, H:G.290, H:G.292, H:K.293, H:T.294, H:T.295, H:K.461 Salt bridges: H:K.293

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 19 residues within 4Å: Chain A: F.177, P.182, A.219, T.220, I.221, A.222, G.223, H.225 Chain B: F.91, H.92, G.93, A.94, R.97, I.127, L.131, S.152, W.154, C.155, E.158 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:F.91, B:F.91, B:G.93, B:A.94, B:R.97, B:S.152, B:E.158, B:E.158, A:I.221, A:G.223, A:H.225 ATP.6: 18 residues within 4Å: Chain C: F.177, P.182, A.219, T.220, I.221, A.222, G.223, H.225 Chain H: F.91, H.92, G.93, A.94, R.97, D.118, I.127, W.154, C.155, E.158 10 PLIP interactions: 7 interactions with chain H, 3 interactions with chain C Hydrogen bonds: H:F.91, H:F.91, H:G.93, H:A.94, H:E.158, H:E.158, C:I.221, C:G.223, C:H.225 Salt bridges: H:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, S. et al., Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme. Science (2020)

Release Date

2020-12-16

Peptides

NAD+ hydrolase (NADase): ABCH
Avirulence protein ATR1: DEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

H
D

D
E

E
H

F
F

G
G

NAD+ hydrolase (NADase)

Avirulence protein ATR1

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