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SMTL ID : 7ctl.1
Crystal structure of NADH bound holo form of alpha-glucuronidase (TM0752) from Thermotoga maritima at 1.97 Angstrom resolution
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.97 Å
Oligo State
homo-dimer
Ligands
2 x
NAI
:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
(Non-covalent)
NAI.1:
28 residues within 4Å:
Chain A:
I.18
,
G.19
,
G.21
,
S.22
,
F.25
,
M.49
,
D.50
,
V.51
,
H.52
,
R.55
,
T.95
,
A.96
,
Y.97
,
P.98
,
Y.99
,
S.106
,
G.107
,
T.137
,
L.150
,
T.170
,
A.171
,
N.172
,
F.192
,
C.193
,
H.194
,
R.322
,
E.356
,
H.358
22
PLIP interactions
:
22 interactions with chain A
Hydrophobic interactions:
A:F.25
Hydrogen bonds:
A:G.19
,
A:G.21
,
A:G.21
,
A:S.22
,
A:D.50
,
A:V.51
,
A:R.55
,
A:R.55
,
A:T.95
,
A:Y.97
,
A:Y.99
,
A:N.172
,
A:N.172
,
A:E.356
Water bridges:
A:Y.99
,
A:G.107
,
A:G.107
,
A:T.137
,
A:T.137
,
A:R.322
Salt bridges:
A:R.322
NAI.2:
28 residues within 4Å:
Chain B:
I.18
,
G.19
,
G.21
,
S.22
,
F.25
,
M.49
,
D.50
,
V.51
,
H.52
,
R.55
,
T.95
,
A.96
,
Y.97
,
P.98
,
Y.99
,
S.106
,
G.107
,
T.137
,
L.150
,
T.170
,
A.171
,
N.172
,
F.192
,
C.193
,
H.194
,
R.322
,
E.356
,
H.358
23
PLIP interactions
:
23 interactions with chain B
Hydrophobic interactions:
B:F.25
Hydrogen bonds:
B:G.19
,
B:G.21
,
B:G.21
,
B:S.22
,
B:D.50
,
B:V.51
,
B:R.55
,
B:R.55
,
B:T.95
,
B:Y.97
,
B:Y.99
,
B:N.172
,
B:N.172
,
B:E.356
,
B:E.356
Water bridges:
B:Y.99
,
B:G.107
,
B:G.107
,
B:T.137
,
B:T.137
,
B:R.322
Salt bridges:
B:R.322
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mohapatra, S.B. et al., Structural basis of catalysis and substrate recognition by the NAD(H)-dependent alpha-d-glucuronidase from the glycoside hydrolase family 4. Biochem.J. (2021)
Release Date
2021-09-01
Peptides
Alpha-glucosidase, putative:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Alpha-glucosidase, putative
Toggle Identical (AB)
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1vjt.1
|
6kcx.1
|
7brf.1
|
7ctd.1
|
7ctm.1
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