SMTL ID : 7cua.1

The structure of YoeB dimer from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain B: S.36, R.39, N.40, G.45, I.46 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.36, B:N.40, B:I.46 Water bridges: B:S.36 Salt bridges: B:R.39 SO4.2: 4 residues within 4Å: Chain C: S.36, N.40, G.45, I.46 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.46 Water bridges: C:N.40 SO4.3: 3 residues within 4Å: Chain C: G.41, A.42, L.43 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:A.42, C:L.43 Water bridges: C:N.40, C:G.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, L. et al., Distinct oligomeric structures of the YoeB-YefM complex provide insights into the conditional cooperativity of type II toxin-antitoxin system. Nucleic Acids Res. (2020)

Release Date

2020-09-09

Peptides

YoeB: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

YoeB

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