- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.2: 6 residues within 4Å:- Chain A: I.243, N.270, G.296, Q.298
- Chain B: T.67
- Ligands: AZA.1
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:T.67, B:T.67, A:N.270, A:G.296, A:Q.298
- Water bridges: B:K.7
OXY.9: 6 residues within 4Å:- Chain A: T.67
- Chain B: I.243, N.270, G.296, Q.298
- Ligands: AZA.8
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.270, B:G.296, B:Q.298, A:T.67
- Water bridges: A:K.7
OXY.13: 6 residues within 4Å:- Chain C: I.243, N.270, G.296, Q.298
- Chain D: T.67
- Ligands: AZA.12
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:T.67, D:T.67, C:N.270, C:G.296, C:Q.298
- Water bridges: D:K.7
OXY.20: 6 residues within 4Å:- Chain C: T.67
- Chain D: I.243, N.270, G.296, Q.298
- Ligands: AZA.19
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:N.270, D:G.296, D:Q.298, C:T.67
- Water bridges: C:K.7
- 10 x MXE: 2-METHOXYETHANOL(Non-covalent)
MXE.3: 10 residues within 4Å:- Chain A: E.113, P.115, F.116, E.140, Y.141, A.142, L.165, A.224, E.225, R.228
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.225, A:E.225, A:R.228
- Water bridges: A:R.34
MXE.4: 7 residues within 4Å:- Chain A: Y.4, S.46, V.47, G.48, K.106, I.107, S.108
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.106
MXE.5: 8 residues within 4Å:- Chain A: D.35, H.36, I.37, L.38, F.116, E.117, T.118, F.134
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.36, A:I.37, A:L.38
- Water bridges: A:D.35, A:F.116
MXE.6: 7 residues within 4Å:- Chain A: Y.4, K.44
- Chain B: E.267, Q.269, Y.295, F.297, C.299
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.269, B:Y.295, A:K.44
MXE.7: 7 residues within 4Å:- Chain A: Q.269, Y.295, F.297, C.299
- Chain B: Y.4, K.44, S.46
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.269, A:Y.295
MXE.14: 10 residues within 4Å:- Chain C: E.113, P.115, F.116, E.140, Y.141, A.142, L.165, A.224, E.225, R.228
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:E.225, C:E.225, C:R.228
- Water bridges: C:R.34
MXE.15: 7 residues within 4Å:- Chain C: Y.4, S.46, V.47, G.48, K.106, I.107, S.108
1 PLIP interactions:1 interactions with chain C- Water bridges: C:K.106
MXE.16: 8 residues within 4Å:- Chain C: D.35, H.36, I.37, L.38, F.116, E.117, T.118, F.134
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:H.36, C:I.37, C:L.38
- Water bridges: C:D.35, C:F.116
MXE.17: 7 residues within 4Å:- Chain C: Y.4, K.44
- Chain D: E.267, Q.269, Y.295, F.297, C.299
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:K.44, D:Q.269, D:Y.295
MXE.18: 7 residues within 4Å:- Chain C: Q.269, Y.295, F.297, C.299
- Chain D: Y.4, K.44, S.46
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.269, C:Y.295
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 2 residues within 4Å:- Chain B: R.292
- Chain C: R.292
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Salt bridges: B:R.292, C:R.292
SO4.21: 2 residues within 4Å:- Chain A: R.292
- Chain D: R.292
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Salt bridges: A:R.292, D:R.292
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity. J.Biochem. (2021)
- Release Date
- 2020-11-25
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 10 x MXE: 2-METHOXYETHANOL(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity. J.Biochem. (2021)
- Release Date
- 2020-11-25
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B