SMTL ID : 7cvp.1

The Crystal Structure of human PHGDH from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: T.92, N.116, G.166, L.167, G.168, R.169, I.170, Y.188, D.189, P.190, I.191, I.192, H.220, T.221, P.222, T.227, C.248, A.249, R.250, D.274, H.297, G.299, A.300 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.116 Hydrogen bonds: A:T.92, A:G.166, A:L.167, A:R.169, A:I.170, A:I.191, A:T.221, A:S.226, A:D.274, A:D.274, A:A.300 Salt bridges: A:R.169 NAD.2: 25 residues within 4Å: Chain B: T.92, G.93, N.116, A.120, G.166, G.168, R.169, I.170, Y.188, D.189, P.190, I.191, H.220, T.221, P.222, L.223, L.224, T.227, C.248, A.249, R.250, D.274, H.297, G.299, A.300 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.120, B:I.170 Hydrogen bonds: B:G.93, B:G.168, B:R.169, B:I.170, B:T.221, B:L.223, B:R.250, B:R.250, B:D.274, B:A.300 Salt bridges: B:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of human PHGDH from Biortus. To Be Published

Release Date

2020-09-09

Peptides

D-3-phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-3-phosphoglycerate dehydrogenase