SMTL ID : 7cwa.1

Crystal structure of PDE8A catalytic domain in complex with clofarabine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.79, H.115, D.116, D.245 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.115, A:D.116, A:D.245, H2O.1, H2O.1

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.116, E.145, T.187 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.145, H2O.1, H2O.1, H2O.2

1 x CFB: 2-CHLORO-9-(2-DEOXY-2-FLUORO-B -D-ARABINOFURANOSYL)-9H-PURIN-6-AMINE(Non-covalent)

CFB.3: 10 residues within 4Å: Chain A: Y.74, H.75, M.189, D.245, V.246, N.248, I.263, Y.267, Q.297, F.300 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.245, A:N.248, A:N.248, A:Q.297 Water bridges: A:H.75 pi-Stacking: A:F.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Rational Design of 2-Chloroadenine Derivatives as Highly Selective Phosphodiesterase 8A Inhibitors. J.Med.Chem. (2020)

Release Date

2021-09-01

Peptides

High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A

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