SMTL ID : 7cws.1

SARS-CoV-2 Spike Proteins Trimer in Complex with FC05 and H014 Fabs Cocktail

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-mer

Ligands

15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain M: T.95, N.221, T.223 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain M: N.704, L.909, Q.913, Q.1058 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:L.909 NAG-NAG.3: 3 residues within 4Å: Chain M: N.788, S.790, Q.791 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain M: N.1085, H.1088, F.1090 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain M: I.1119, V.1120, N.1121 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain N: T.95, N.221, T.223 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain N: N.704, L.909, Q.913 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain N: N.788, S.790, Q.791 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain N: N.1085, T.1087, H.1088, F.1090 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 2 residues within 4Å: Chain N: I.1119, N.1121 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain O: T.95, N.221, T.223 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain O: N.704, L.909, Q.913 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain O: N.788, S.790, Q.791 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 2 residues within 4Å: Chain O: I.1119, N.1121 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 4 residues within 4Å: Chain O: N.1085, G.1086, H.1088, F.1090 No protein-ligand interaction detected (PLIP)

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.16: 1 residues within 4Å: Chain M: N.590 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain M: N.603 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain M: H.642, V.643, N.644 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain M: N.696, G.1118 Chain O: D.783 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain M: A.693, E.1059, N.1061 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain N: N.48 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain N: N.590, T.591 Ligand excluded by PLIP NAG.23: 1 residues within 4Å: Chain N: N.603 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain N: H.642, V.643, N.644 Ligand excluded by PLIP NAG.25: 3 residues within 4Å: Chain M: D.783 Chain N: N.696, G.1118 Ligand excluded by PLIP NAG.26: 3 residues within 4Å: Chain N: A.693, E.1059, N.1061 Ligand excluded by PLIP NAG.27: 2 residues within 4Å: Chain O: N.590, T.591 Ligand excluded by PLIP NAG.28: 1 residues within 4Å: Chain O: N.603 Ligand excluded by PLIP NAG.29: 3 residues within 4Å: Chain O: H.642, V.643, N.644 Ligand excluded by PLIP NAG.30: 3 residues within 4Å: Chain N: D.783 Chain O: N.696, G.1118 Ligand excluded by PLIP NAG.31: 3 residues within 4Å: Chain O: A.693, E.1059, N.1061 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, N. et al., Structure-based development of human antibody cocktails against SARS-CoV-2. Cell Res. (2021)

Release Date

2020-12-16

Peptides

Heavy Chain of FC05 Fab: AIK
Light Chain of FC05 Fab: BJL
Light Chain of H014 Fab: CEG
Heavy Chain of H014 Fab: DFH
Spike glycoprotein: MNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

I
N

K
P

B
C

J
K

L
M

C
D

E
F

G
H

D
E

F
G

H
I

M
O

N
Q

O
R

Heavy Chain of FC05 Fab

Light Chain of FC05 Fab

Light Chain of H014 Fab

Heavy Chain of H014 Fab

Spike glycoprotein

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