SMTL ID : 7cy4.1

Crystal Structure of CMD1 in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.719, D.721, H.771 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.719, A:D.721, A:H.771, H2O.9, H2O.9

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 3 residues within 4Å: Chain A: Y.156, F.157, W.231 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, W. et al., Molecular mechanism for vitamin C-derived C 5 -glyceryl-methylcytosine DNA modification catalyzed by algal TET homologue CMD1. Nat Commun (2021)

Release Date

2020-12-30

Peptides

Maltodextrin-binding protein,5-methylcytosine-modifying enzyme 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltodextrin-binding protein,5-methylcytosine-modifying enzyme 1

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