SMTL ID : 7cyx.1

Crystal strcuture of Glycine oxidase from Bacillus cereus ATCC 14579

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.10, G.11, G.13, V.14, I.15, V.33, E.34, K.35, E.41, A.42, S.43, A.46, A.47, G.48, L.49, T.177, E.178, V.179, A.207, G.208, G.209, W.211, V.232, Y.252, A.265, G.306, L.307, R.308, P.309, Y.334, R.335, N.336, G.337, I.338, L.339 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:A.46, A:V.232, A:A.265, A:R.308 Hydrogen bonds: A:G.12, A:G.13, A:V.14, A:I.15, A:K.35, A:A.42, A:A.42, A:S.43, A:S.43, A:A.47, A:L.49, A:L.49, A:V.179, A:V.179, A:G.209, A:Y.334, A:N.336, A:G.337, A:I.338, A:L.339 Water bridges: A:G.16, A:G.16, A:E.41, A:E.41, A:S.210, A:S.210 pi-Cation interactions: A:K.35 FAD.2: 34 residues within 4Å: Chain B: I.10, G.11, G.12, G.13, V.14, I.15, V.33, E.34, K.35, E.41, A.42, S.43, A.46, A.47, G.48, L.49, T.177, E.178, V.179, A.207, G.208, G.209, W.211, V.232, Y.252, G.306, R.308, P.309, Y.334, R.335, N.336, G.337, I.338, L.339 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:A.46, B:V.232, B:R.308 Hydrogen bonds: B:G.12, B:G.13, B:V.14, B:I.15, B:K.35, B:A.42, B:A.42, B:S.43, B:S.43, B:A.47, B:L.49, B:L.49, B:V.179, B:V.179, B:G.209, B:Y.334, B:G.337, B:I.338, B:L.339 Water bridges: B:G.16, B:E.41, B:S.43 pi-Cation interactions: B:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seok, J. et al., Structural basis for stereospecificity to d-amino acid of glycine oxidase from Bacillus cereus ATCC 14579. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-10-14

Peptides

Glycine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycine oxidase