SMTL ID : 7cz2.1

The complex structure of MSMEG_1954-ADP from Mycobacterium smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: A.131, S.132, A.133, S.134, V.138, A.150, K.152, E.199, P.225, S.237, E.238, W.239, M.240, G.285, N.286, I.298, D.299 Ligands: CA.2, CA.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.134, A:E.199, A:E.238, A:M.240 Water bridges: A:S.134, A:S.134, A:K.152, A:K.152, A:S.237, A:S.237, A:S.237, A:G.285, A:N.286, A:N.286, A:D.299 Salt bridges: A:K.152, A:K.152 pi-Stacking: A:W.239

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.299 Ligands: ADP.1, CA.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.299, H2O.4, H2O.4, H2O.6, H2O.7 CA.3: 4 residues within 4Å: Chain A: N.286, D.299 Ligands: ADP.1, CA.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.299, H2O.2, H2O.6, H2O.7

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: S.124, D.126, K.140, G.141, I.142, E.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.140, A:K.140, A:E.148 Water bridges: A:E.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Conformational Changes in a Macrolide Antibiotic Binding Protein From Mycobacterium smegmatis Upon ADP Binding. Front Microbiol (2021)

Release Date

2021-12-08

Peptides

ABC1 family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC1 family protein

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