SMTL ID : 7cze.4 (3 other biounits)

Crystal structure of Epstein-Barr virus (EBV) gHgL and in complex with the ligand binding domian (LBD) of EphA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.43, E.46, D.47, S.50 Chain B: Q.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.47, A:D.47, A:S.50 NAG.2: 2 residues within 4Å: Chain A: I.531, N.532 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.531 Hydrogen bonds: A:N.532 NAG.3: 2 residues within 4Å: Chain B: N.30, S.94 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: N.46, G.47 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, C. et al., Molecular basis of EphA2 recognition by gHgL from gammaherpesviruses. Nat Commun (2020)

Release Date

2020-10-21

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Ephrin type-A receptor 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
K

Envelope glycoprotein H

Envelope glycoprotein L

Ephrin type-A receptor 2

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