SMTL ID : 7d19.1

Crystal structure of mouse Cryptochrome 1 in complex with compound TH129

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x GOC: N-[2-(2,4-dimethylphenyl)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]-4-(phenylcarbonyl)benzamide(Non-covalent)

GOC.1: 18 residues within 4Å: Chain A: Q.291, W.294, F.298, H.357, R.360, H.361, A.364, F.383, D.389, A.390, I.394, N.395, S.398, W.399, W.401, L.402, Q.409, F.411 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.294, A:W.294, A:F.298, A:R.360, A:A.364, A:F.383, A:F.383, A:I.394, A:W.399 Hydrogen bonds: A:R.360, A:S.398, A:S.398 pi-Stacking: A:F.411 pi-Cation interactions: A:H.357, A:H.361 GOC.2: 21 residues within 4Å: Chain A: E.198, E.199 Chain B: Q.291, W.294, R.295, F.298, H.357, R.360, H.361, A.364, F.383, D.389, A.390, I.394, N.395, S.398, W.399, W.401, L.402, Q.409, F.411 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:W.294, B:W.294, B:F.298, B:R.360, B:A.364, B:F.383, B:F.383, B:I.394, B:L.402, B:Q.409 Hydrogen bonds: B:Q.291, B:R.360, B:S.398, B:S.398 pi-Stacking: B:F.411 pi-Cation interactions: B:H.357, B:H.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolarski, D. et al., Photopharmacological Manipulation of Mammalian CRY1 for Regulation of the Circadian Clock. J.Am.Chem.Soc. (2021)

Release Date

2021-01-27

Peptides

Cryptochrome-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cryptochrome-1

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