SMTL ID : 7d61.1

Cryo-EM Structure of human CALHM5 in the presence of EDTA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-11-mer

Ligands

55 x PA8: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PA8.1: 8 residues within 4Å: Chain A: V.17, Y.20, S.194, T.198, R.202 Chain B: L.65, F.68, W.74 Ligand excluded by PLIP PA8.2: 5 residues within 4Å: Chain A: L.69, N.70, N.71 Chain K: Q.14, V.17 Ligand excluded by PLIP PA8.3: 7 residues within 4Å: Chain A: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.4 Ligand excluded by PLIP PA8.4: 6 residues within 4Å: Chain A: K.15, T.16, G.19, M.23, L.26 Ligands: PA8.3 Ligand excluded by PLIP PA8.5: 6 residues within 4Å: Chain A: R.32, L.120, N.121 Chain B: L.33, V.37, K.40 Ligand excluded by PLIP PA8.6: 10 residues within 4Å: Chain B: T.16, V.17, Y.20, S.194, T.198, R.202 Chain C: L.65, F.68, W.74 Ligands: PA8.8 Ligand excluded by PLIP PA8.7: 5 residues within 4Å: Chain A: Q.14 Chain B: G.66, L.69, N.70, N.71 Ligand excluded by PLIP PA8.8: 8 residues within 4Å: Chain B: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.6, PA8.9 Ligand excluded by PLIP PA8.9: 7 residues within 4Å: Chain B: K.15, T.16, G.19, F.22, M.23, L.26 Ligands: PA8.8 Ligand excluded by PLIP PA8.10: 6 residues within 4Å: Chain B: R.32, L.120, N.121 Chain C: L.33, V.37, K.40 Ligand excluded by PLIP PA8.11: 9 residues within 4Å: Chain C: V.17, Y.20, S.194, T.198, R.202 Chain D: L.65, F.68, W.74 Ligands: PA8.13 Ligand excluded by PLIP PA8.12: 5 residues within 4Å: Chain B: Q.14 Chain C: L.69, N.70, N.71 Ligands: PA8.14 Ligand excluded by PLIP PA8.13: 8 residues within 4Å: Chain C: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.11, PA8.14 Ligand excluded by PLIP PA8.14: 7 residues within 4Å: Chain C: K.15, T.16, G.19, M.23, L.26 Ligands: PA8.12, PA8.13 Ligand excluded by PLIP PA8.15: 5 residues within 4Å: Chain C: R.32, N.121 Chain D: L.33, V.37, K.40 Ligand excluded by PLIP PA8.16: 8 residues within 4Å: Chain D: T.16, V.17, Y.20, S.194, T.198, R.202 Chain E: L.65, W.74 Ligand excluded by PLIP PA8.17: 4 residues within 4Å: Chain C: Q.14 Chain D: L.69, N.70, N.71 Ligand excluded by PLIP PA8.18: 8 residues within 4Å: Chain D: Y.98, G.101, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.19 Ligand excluded by PLIP PA8.19: 6 residues within 4Å: Chain D: K.15, T.16, G.19, M.23, L.26 Ligands: PA8.18 Ligand excluded by PLIP PA8.20: 6 residues within 4Å: Chain D: R.32, L.120, N.121 Chain E: L.33, V.37, K.40 Ligand excluded by PLIP PA8.21: 8 residues within 4Å: Chain E: Y.20, S.194, T.198, R.202 Chain F: L.65, F.68, W.74 Ligands: PA8.23 Ligand excluded by PLIP PA8.22: 6 residues within 4Å: Chain D: Q.14, V.17 Chain E: L.69, N.70, N.71 Ligands: PA8.24 Ligand excluded by PLIP PA8.23: 8 residues within 4Å: Chain E: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.21, PA8.24 Ligand excluded by PLIP PA8.24: 8 residues within 4Å: Chain E: K.15, T.16, G.19, F.22, M.23, L.26 Ligands: PA8.22, PA8.23 Ligand excluded by PLIP PA8.25: 6 residues within 4Å: Chain E: R.32, L.120, N.121 Chain F: L.33, V.37, K.40 Ligand excluded by PLIP PA8.26: 9 residues within 4Å: Chain F: T.16, V.17, Y.20, S.194, T.198, R.202 Chain G: L.65, W.74 Ligands: PA8.28 Ligand excluded by PLIP PA8.27: 4 residues within 4Å: Chain E: Q.14 Chain F: L.69, N.70, N.71 Ligand excluded by PLIP PA8.28: 8 residues within 4Å: Chain F: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.26, PA8.29 Ligand excluded by PLIP PA8.29: 6 residues within 4Å: Chain F: K.15, T.16, G.19, M.23, L.26 Ligands: PA8.28 Ligand excluded by PLIP PA8.30: 6 residues within 4Å: Chain F: R.32, N.121 Chain G: L.33, V.37, A.38, K.40 Ligand excluded by PLIP PA8.31: 9 residues within 4Å: Chain G: V.17, Y.20, S.194, T.198, R.202 Chain H: L.65, F.68, W.74 Ligands: PA8.33 Ligand excluded by PLIP PA8.32: 5 residues within 4Å: Chain F: Q.14, V.17 Chain G: L.69, N.70, N.71 Ligand excluded by PLIP PA8.33: 8 residues within 4Å: Chain G: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.31, PA8.34 Ligand excluded by PLIP PA8.34: 7 residues within 4Å: Chain G: K.15, T.16, G.19, F.22, M.23, L.26 Ligands: PA8.33 Ligand excluded by PLIP PA8.35: 6 residues within 4Å: Chain G: R.32, L.120, N.121 Chain H: L.33, V.37, K.40 Ligand excluded by PLIP PA8.36: 10 residues within 4Å: Chain H: T.16, V.17, Y.20, S.194, T.198, R.202 Chain I: L.65, F.68, L.69, W.74 Ligand excluded by PLIP PA8.37: 5 residues within 4Å: Chain G: Q.14 Chain H: L.69, N.70, N.71 Ligands: PA8.39 Ligand excluded by PLIP PA8.38: 7 residues within 4Å: Chain H: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.39 Ligand excluded by PLIP PA8.39: 8 residues within 4Å: Chain H: K.15, T.16, G.19, F.22, M.23, L.26 Ligands: PA8.37, PA8.38 Ligand excluded by PLIP PA8.40: 6 residues within 4Å: Chain H: R.32, L.120, N.121 Chain I: L.33, V.37, K.40 Ligand excluded by PLIP PA8.41: 9 residues within 4Å: Chain I: V.17, Y.20, S.194, T.198, R.202 Chain J: L.65, F.68, W.74 Ligands: PA8.43 Ligand excluded by PLIP PA8.42: 4 residues within 4Å: Chain H: Q.14 Chain I: L.69, N.70, N.71 Ligand excluded by PLIP PA8.43: 9 residues within 4Å: Chain I: Y.98, G.101, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.41, PA8.44 Ligand excluded by PLIP PA8.44: 7 residues within 4Å: Chain I: K.15, T.16, G.19, F.22, M.23, L.26 Ligands: PA8.43 Ligand excluded by PLIP PA8.45: 5 residues within 4Å: Chain I: R.32, L.120, N.121 Chain J: L.33, V.37 Ligand excluded by PLIP PA8.46: 8 residues within 4Å: Chain J: T.16, V.17, Y.20, S.194, R.202 Chain K: L.65, F.68, W.74 Ligand excluded by PLIP PA8.47: 3 residues within 4Å: Chain J: L.69, N.70, N.71 Ligand excluded by PLIP PA8.48: 8 residues within 4Å: Chain J: Y.98, G.101, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.49 Ligand excluded by PLIP PA8.49: 6 residues within 4Å: Chain J: K.15, T.16, G.19, M.23, L.26 Ligands: PA8.48 Ligand excluded by PLIP PA8.50: 6 residues within 4Å: Chain J: R.32, L.120, N.121 Chain K: L.33, V.37, K.40 Ligand excluded by PLIP PA8.51: 8 residues within 4Å: Chain A: L.65, F.68, W.74 Chain K: V.17, Y.20, S.194, R.202 Ligands: PA8.53 Ligand excluded by PLIP PA8.52: 5 residues within 4Å: Chain J: Q.14, V.17 Chain K: L.69, N.70, N.71 Ligand excluded by PLIP PA8.53: 8 residues within 4Å: Chain K: Y.98, Q.102, L.105, S.194, T.197, A.201 Ligands: PA8.51, PA8.54 Ligand excluded by PLIP PA8.54: 6 residues within 4Å: Chain K: K.15, T.16, G.19, F.22, M.23 Ligands: PA8.53 Ligand excluded by PLIP PA8.55: 5 residues within 4Å: Chain A: L.33, V.37, K.40 Chain K: R.32, N.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Cryo-EM structures of human calcium homeostasis modulator 5. Cell Discov (2020)

Release Date

2020-12-23

Peptides

Calcium homeostasis modulator protein 5: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Membrane

We predict this structure to be a membrane protein.
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Calcium homeostasis modulator protein 5

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