SMTL ID : 7d6a.1 (1 other biounit)

Crystal structure of Oryza sativa Os4BGlu18 monolignol beta-glucosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: V.174, Y.242, M.355, P.356, T.357, F.358, F.444 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.242

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Q.23, H.125, N.170, E.171, N.312, E.385, W.434, E.441, W.442 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.23, A:H.125, A:N.170, A:E.171, A:N.312, A:E.441 GOL.3: 7 residues within 4Å: Chain A: G.26, A.27, E.30, D.55, I.56, D.59, H.62 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.27, A:I.56 Water bridges: A:A.27, A:Y.28 GOL.4: 7 residues within 4Å: Chain A: N.37, V.40, F.41, Q.130, E.133, P.186, P.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.37, A:Q.130 GOL.5: 7 residues within 4Å: Chain A: K.49, A.354, G.391, G.392, F.444, T.447, L.448 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.49, A:T.447 GOL.6: 5 residues within 4Å: Chain A: I.56, A.57, Y.446, Y.457, Q.460 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.57, A:Q.460 Water bridges: A:I.56, A:A.57 GOL.7: 6 residues within 4Å: Chain A: L.70, S.73, Y.453, P.464, L.469, K.472 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.73, A:S.73, A:K.472 GOL.8: 9 residues within 4Å: Chain A: T.124, H.125, Y.126, F.169, N.170, P.172, A.175, V.176, V.214 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.126, A:N.170, A:N.170 Water bridges: A:Y.126, A:Y.126, A:W.139, A:W.139, A:W.139, A:W.139 GOL.9: 5 residues within 4Å: Chain A: H.212, L.216, P.292, S.293, D.298 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.212, A:S.293, A:D.298 Water bridges: A:Q.145, A:S.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baiya, S. et al., Structural analysis of rice Os4BGlu18 monolignol beta-glucosidase. Plos One (2021)

Release Date

2021-01-13

Peptides

Beta-glucosidase 18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase 18

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