SMTL ID : 7d6h.1

Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.194, C.197, C.229, C.231 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.194, A:C.197, A:C.229, A:C.231 ZN.3: 4 residues within 4Å: Chain B: C.194, C.197, C.229, C.231 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.194, B:C.197, B:C.229, B:C.231

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: W.111, N.114, N.115, S.116, G.276, H.277 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.114, A:S.116, A:S.116, A:S.116, A:S.116 Water bridges: A:W.111, A:Y.117, A:H.277 Salt bridges: A:H.277 PO4.4: 6 residues within 4Å: Chain B: W.111, N.114, N.115, S.116, G.276, H.277 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.114, B:S.116, B:S.116, B:S.116, B:S.116 Water bridges: B:W.111, B:Y.117, B:H.277 Salt bridges: B:H.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, H. et al., Development of potent and selective inhibitors targeting the papain-like protease of SARS-CoV-2. Cell Chem Biol (2021)

Release Date

2020-11-04

Peptides

Papain-like protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Papain-like protease