SMTL ID : 7d7u.2 (2 other biounits)

Crystal structure of Ago2 MID domain in complex with 8-Br-adenosin-5'-monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 8BR: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE(Non-covalent)

8BR.1: 12 residues within 4Å: Chain A: L.83, G.85, K.86, T.87, Y.90, K.94, T.105, Q.106, C.107, Q.109, K.127, K.131 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.87, A:T.87, A:T.105, A:Q.106, A:C.107, A:Q.109 Water bridges: A:K.86, A:Y.90, A:K.94, A:K.127, A:K.131, A:K.131 Salt bridges: A:K.94, A:K.131 pi-Stacking: A:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shinohara, F. et al., siRNA potency enhancement via chemical modifications of nucleotide bases at the 5'-end of the siRNA guide strand. Rna (2021)

Release Date

2020-11-25

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein argonaute-2

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