SMTL ID : 7d87.1

Crystal Structure of zebrafish PHF14-PZP in complex with H3(1-25)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.148, C.153, C.185, H.188 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.148, A:C.153, A:C.185, A:H.188 ZN.2: 4 residues within 4Å: Chain A: C.75, C.78, H.95, C.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.75, A:C.78, A:H.95, A:C.98 ZN.3: 4 residues within 4Å: Chain A: C.131, C.134, H.158, C.161 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:C.134, A:H.158, A:C.161 ZN.4: 4 residues within 4Å: Chain A: C.12, C.15, H.37, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:H.37, A:C.40 ZN.5: 4 residues within 4Å: Chain A: C.29, C.32, C.64, C.67 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.29, A:C.32, A:C.64, A:C.67

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 3 residues within 4Å: Chain A: Y.101, D.179, F.181 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.179, A:F.181, H2O.1, H2O.2, H2O.2, H2O.2 CA.7: 4 residues within 4Å: Chain A: A.99, L.100, V.102, V.105 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.99, A:V.102, A:V.105, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, S. et al., Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14. Nucleic Acids Res. (2021)

Release Date

2021-07-28

Peptides

PHD finger protein 14: A
Gene for histone H3 (germline gene): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

PHD finger protein 14

Gene for histone H3 (germline gene)

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