SMTL ID : 7d8e.3 (2 other biounits)

Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.127, E.170, W.297, H.298 Ligands: GYO.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.127, A:D.127, A:E.170, A:E.170, A:H.298

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.8, N.9, N.231, R.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.8, A:R.234 Water bridges: A:P.230, A:N.231 EDO.3: 4 residues within 4Å: Chain A: Y.267, S.291, P.292, F.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.291, A:F.293

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.185, R.280 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.280, A:R.280, A:R.280, A:R.281 Salt bridges: A:R.185, A:R.280 SO4.5: 3 residues within 4Å: Chain A: E.7, H.11, R.101 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.12, A:Q.12 Salt bridges: A:H.11, A:R.101

1 x GYO: ~{N}-[(1~{S},2~{S})-2-(2-methoxyphenyl)cyclopropyl]-3~{H}-benzimidazole-5-carboxamide(Non-covalent)

GYO.6: 15 residues within 4Å: Chain A: H.108, K.112, F.114, D.127, E.169, E.170, H.174, W.175, D.216, L.217, Q.272, D.273, W.297, H.298 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.175, A:W.175, A:W.297 pi-Stacking: A:W.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dileep, K.V. et al., Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase in complex with LSB-09. To Be Published

Release Date

2021-12-08

Peptides

Glutaminyl-peptide cyclotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Glutaminyl-peptide cyclotransferase

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