SMTL ID : 7d8u.1 (1 other biounit)

Crystal structure of the C-terminal domain of pNP868R from African swine fever virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 16 residues within 4Å: Chain A: K.25, G.42, I.43, G.44, Q.47, D.48, D.64, K.65, D.66, Q.97, D.98, L.99, N.127, L.128, F.129, Y.132 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.47, A:D.48, A:K.65, A:D.98, A:L.99 Water bridges: A:K.45, A:N.127 Salt bridges: A:K.25 pi-Stacking: A:F.129, A:F.129

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.77, F.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.77 EDO.3: 3 residues within 4Å: Chain A: K.250, I.253, P.254 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, X. et al., Structure and Biochemical Characteristic of the Methyltransferase (MTase) Domain of RNA Capping Enzyme from African Swine Fever Virus. J.Virol. (2020)

Release Date

2020-12-02

Peptides

GTP--RNA guanylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTP--RNA guanylyltransferase

Related Entries With Identical Sequence