SMTL ID : 7daa.1

Crystal structure of basigin complexed with anti-basigin Fab fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-1-mer

Ligands

16 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: D.93 Ligand excluded by PLIP CD.2: 1 residues within 4Å: Chain A: E.28 Ligand excluded by PLIP CD.3: 2 residues within 4Å: Chain A: K.26 Chain B: D.54 Ligand excluded by PLIP CD.4: 1 residues within 4Å: Chain B: D.78 Ligand excluded by PLIP CD.5: 1 residues within 4Å: Chain B: E.80 Ligand excluded by PLIP CD.6: 2 residues within 4Å: Chain B: E.107, E.169 Ligand excluded by PLIP CD.7: 2 residues within 4Å: Chain B: D.171, K.173 Ligand excluded by PLIP CD.8: 4 residues within 4Å: Chain B: N.142, D.171, D.174 Chain C: H.163 Ligand excluded by PLIP CD.9: 2 residues within 4Å: Chain B: A.148, E.165 Ligand excluded by PLIP CD.10: 1 residues within 4Å: Chain B: E.199 Ligand excluded by PLIP CD.11: 1 residues within 4Å: Chain B: D.126 Ligand excluded by PLIP CD.12: 2 residues within 4Å: Chain B: H.202, L.205 Ligand excluded by PLIP CD.13: 1 residues within 4Å: Chain C: D.30 Ligand excluded by PLIP CD.14: 1 residues within 4Å: Chain C: E.211 Ligand excluded by PLIP CD.15: 1 residues within 4Å: Chain C: E.4 Ligand excluded by PLIP CD.16: 1 residues within 4Å: Chain C: Y.96 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakuragi, T. et al., The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-10-20

Peptides

Isoform 2 of Basigin: A
Light chain of antibody Fab fragment: B
Heavy chain of antibody Fab fragment: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Isoform 2 of Basigin

Light chain of antibody Fab fragment

Heavy chain of antibody Fab fragment

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