SMTL ID : 7day.1

Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in TDP013-, and GSH-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

3 x H1X: 2-[(5-tert-butyl-2-methyl-phenyl)sulfonylamino]benzoic acid(Non-covalent)

H1X.1: 12 residues within 4Å: Chain A: P.22, L.45, F.46, Q.50, F.117, D.120, S.121, M.124, S.125, V.128, L.215 Ligands: GSH.2 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.22, A:F.46, A:F.46, A:F.117, A:M.124, A:V.128 Hydrogen bonds: A:S.121 Water bridges: A:S.121, B:R.118 H1X.3: 11 residues within 4Å: Chain A: E.86, W.95, H.99, R.102, M.103 Chain B: I.82, E.86, W.95, Q.97, R.102, M.103 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.82 Hydrogen bonds: B:R.102, A:R.102 Salt bridges: B:R.102 pi-Stacking: B:W.95, A:W.95 H1X.4: 12 residues within 4Å: Chain B: R.20, S.21, P.22, L.45, F.46, F.117, D.120, S.121, M.124, T.179, L.215 Ligands: GSH.5 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:P.22, B:L.45, B:F.117, B:T.179, B:L.215 Water bridges: B:S.121, A:R.118

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 16 residues within 4Å: Chain A: S.21, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, C.113, F.117 Chain B: S.114 Ligands: H1X.1 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.117 Hydrogen bonds: A:Q.50, A:V.64, A:V.64, A:D.76, A:S.77, B:S.114 Water bridges: A:H.78 Salt bridges: A:H.62, A:H.78 GSH.5: 17 residues within 4Å: Chain A: S.114 Chain B: S.21, P.22, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, C.113, F.117 Ligands: H1X.4 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.50, B:V.64, B:V.64, B:D.76, B:S.77, A:S.114 Water bridges: B:V.64, B:T.75 Salt bridges: B:H.62, B:H.78

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.6: 5 residues within 4Å: Chain B: L.33, S.93, L.94, L.166, L.202 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koiwai, K. et al., Non-steroidal inhibitors of Drosophila melanogaster steroidogenic glutathione S -transferase Noppera-bo. J Pestic Sci (2021)

Release Date

2021-02-10

Peptides

Glutathione S-transferase E14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase E14

Related Entries With Identical Sequence