- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: G.282, I.283, E.284, K.317, D.321
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.284, A:N.285, A:D.321
GOL.3: 8 residues within 4Å:- Chain A: I.37, G.41
- Chain B: I.37, S.38, G.41, K.42, L.254
- Ligands: GOL.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.37
GOL.4: 12 residues within 4Å:- Chain A: S.202, G.203, V.204, N.205, G.208, S.210
- Chain C: S.202, G.203, V.204, N.205, G.208, S.210
8 PLIP interactions:3 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: A:S.202, A:V.204, C:G.203, C:N.205
- Water bridges: A:L.211, C:S.210, C:S.210, C:L.211
GOL.6: 12 residues within 4Å:- Chain B: S.202, G.203, V.204, N.205, G.208, S.210
- Chain D: S.202, G.203, V.204, N.205, G.208, S.210
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:G.203, B:N.205, B:G.208, D:G.203, D:N.205
- Water bridges: B:L.211, D:L.211
GOL.7: 5 residues within 4Å:- Chain A: M.63, Q.66
- Chain B: Y.172, L.173, E.176
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.66
- Water bridges: A:Q.66, B:E.176
GOL.8: 5 residues within 4Å:- Chain B: R.171, H.186, W.188
- Chain D: S.183, H.186
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:R.171, B:R.171, B:H.186
- Water bridges: B:W.188, D:A.207
GOL.9: 6 residues within 4Å:- Chain A: S.38, G.41, L.254
- Chain B: I.37, G.41
- Ligands: GOL.3
No protein-ligand interaction detected (PLIP)GOL.10: 6 residues within 4Å:- Chain B: K.22, E.47, K.76, V.78, V.85, A.87
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.76
GOL.11: 6 residues within 4Å:- Chain B: D.130, C.131, I.132, H.156, R.157, R.298
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.130
- Water bridges: B:D.130, B:I.132, B:R.157
GOL.13: 8 residues within 4Å:- Chain C: N.164, S.167, A.168, R.171, D.258, H.271, P.272
- Chain D: L.70
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.164, C:R.171, C:R.171, C:D.258
- Water bridges: C:S.167
GOL.14: 8 residues within 4Å:- Chain C: I.37, S.38, G.41, K.42, L.254
- Chain D: I.37, G.41
- Ligands: GOL.15
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:I.37
- Water bridges: C:K.42, C:K.42
GOL.15: 8 residues within 4Å:- Chain C: S.38, G.41
- Chain D: I.37, S.38, G.41, K.42, L.254
- Ligands: GOL.14
No protein-ligand interaction detected (PLIP)GOL.17: 3 residues within 4Å:- Chain A: K.155
- Chain D: V.11, E.13
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:K.155, D:V.11
GOL.18: 6 residues within 4Å:- Chain B: S.184, H.186
- Chain D: R.171, H.186, W.188, I.270
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Water bridges: B:S.184, B:H.186, D:R.171
- Hydrogen bonds: D:R.171, D:H.186
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, S. et al., Identification of the first highly selective inhibitor of human lactate dehydrogenase B. Sci Rep (2021)
- Release Date
- 2021-10-20
- Peptides
- L-lactate dehydrogenase B chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, S. et al., Identification of the first highly selective inhibitor of human lactate dehydrogenase B. Sci Rep (2021)
- Release Date
- 2021-10-20
- Peptides
- L-lactate dehydrogenase B chain: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D