SMTL ID : 7dbo.1 (1 other biounit)

DPBB domain of VCP-like ATPase from Thermoplasma acidophilum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.5, N.6, N.7, G.8, K.88, R.90 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.6, A:N.6, A:N.7, A:N.7, A:G.8 Water bridges: A:R.90, A:R.90 Salt bridges: A:R.90 SO4.2: 7 residues within 4Å: Chain A: E.15, A.16, P.21, I.71, D.72, S.73, R.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.16, A:S.73 Salt bridges: A:R.76 SO4.3: 4 residues within 4Å: Chain A: T.19, R.27, Y.57, R.60 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.27, A:R.60 SO4.4: 3 residues within 4Å: Chain A: E.45, V.92, R.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.93 Water bridges: A:K.91 SO4.5: 2 residues within 4Å: Chain A: R.12, G.84 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.12 SO4.6: 4 residues within 4Å: Chain A: R.76, A.81, S.82, I.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.81, A:I.83 Water bridges: A:R.76 Salt bridges: A:R.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yagi, S. et al., Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. (2021)

Release Date

2021-09-29

Peptides

VCP-like ATPase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VCP-like ATPase

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