SMTL ID : 7dd9.1

Cryo-EM structure of the Ams1 and Nbr1 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.290, D.292, D.402, H.615, D.616 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.290, A:D.292, A:D.402, A:H.615 ZN.2: 4 residues within 4Å: Chain A: C.1114, C.1117, H.1134, C.1136 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1114, A:C.1117, A:H.1134, A:C.1136 ZN.3: 4 residues within 4Å: Chain A: C.1100, C.1103, C.1123, C.1126 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1100, A:C.1103, A:C.1123, A:C.1126 ZN.4: 5 residues within 4Å: Chain B: H.290, D.292, D.402, H.615, D.616 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.290, B:D.292, B:D.402, B:H.615 ZN.5: 4 residues within 4Å: Chain B: C.1114, C.1117, H.1134, C.1136 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1114, B:C.1117, B:H.1134, B:C.1136 ZN.6: 4 residues within 4Å: Chain B: C.1100, C.1103, C.1123, C.1126 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1100, B:C.1103, B:C.1123, B:C.1126 ZN.7: 5 residues within 4Å: Chain C: H.290, D.292, D.402, H.615, D.616 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.290, C:D.292, C:D.402, C:H.615 ZN.8: 4 residues within 4Å: Chain C: C.1114, C.1117, H.1134, C.1136 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1114, C:C.1117, C:H.1134, C:C.1136 ZN.9: 4 residues within 4Å: Chain C: C.1100, C.1103, C.1123, C.1126 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1100, C:C.1103, C:C.1123, C:C.1126 ZN.10: 5 residues within 4Å: Chain D: H.290, D.292, D.402, H.615, D.616 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.290, D:D.292, D:D.402, D:H.615 ZN.11: 4 residues within 4Å: Chain D: C.1114, C.1117, H.1134, C.1136 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.1114, D:C.1117, D:H.1134, D:C.1136 ZN.12: 4 residues within 4Å: Chain D: C.1100, C.1103, C.1123, C.1126 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.1100, D:C.1103, D:C.1123, D:C.1126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.Y. et al., Molecular and structural mechanisms of ZZ domain-mediated cargo selection by Nbr1. Embo J. (2021)

Release Date

2021-07-14

Peptides

Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein