SMTL ID : 7ddz.1

The Crystal Structure of Human Neuropeptide Y Y2 Receptor with JNJ-31020028

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x H46: ~{N}-[4-[4-[(1~{S})-2-(diethylamino)-2-oxidanylidene-1-phenyl-ethyl]piperazin-1-yl]-3-fluoranyl-phenyl]-2-pyridin-3-yl-benzamide(Non-covalent)

H46.1: 19 residues within 4Å: Chain A: Y.220, T.270, W.279, P.290, Q.293, V.297, Q.298, L.346, R.350, Y.382, S.383, S.386, L.387, L.390, H.589, Q.592, F.611, T.612, H.615 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.270, A:W.279, A:V.297, A:L.346, A:Y.382, A:L.390, A:F.611, A:T.612 Hydrogen bonds: A:R.350, A:Q.592 pi-Stacking: A:H.589

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 17 residues within 4Å: Chain A: S.422, T.423, T.424, G.425, N.426, T.427, S.470, T.471, W.472, G.473, C.505, G.506, D.507, W.510, Y.512, F.513, C.514 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.472, A:W.472, A:W.510, A:W.510 Hydrogen bonds: A:T.423, A:T.424, A:N.426, A:N.426, A:T.427, A:T.427, A:S.470, A:S.470, A:T.471, A:T.471, A:D.507, A:Y.512, A:C.514 pi-Stacking: A:W.510, A:W.510, A:W.510

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, T. et al., Structural basis for ligand recognition of the neuropeptide Y Y 2 receptor. Nat Commun (2021)

Release Date

2021-01-27

Peptides

Human Neuropeptide Y Y2 Receptor fusion protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Human Neuropeptide Y Y2 Receptor fusion protein