SMTL ID : 7de1.1

Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain B: N.105, K.106, I.108, D.109, A.110, K.112, T.113 No protein-ligand interaction detected (PLIP) PEG.2: 4 residues within 4Å: Chain B: P.53, Q.54, Q.57 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.54 PEG.3: 6 residues within 4Å: Chain B: H.51, Q.54, N.96, D.99, L.103 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.54, B:D.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Structural Insight Into the SARS-CoV-2 Nucleocapsid Protein C-Terminal Domain Reveals a Novel Recognition Mechanism for Viral Transcriptional Regulatory Sequences. Front Chem (2020)

Release Date

2021-01-27

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleoprotein