SMTL ID : 7df8.1

full length hNPC1L1-Apo

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.497, L.500 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.2: 3 residues within 4Å: Chain A: N.909, S.912, V.1005 No protein-ligand interaction detected (PLIP) NAG-NAG-NAG.3: 3 residues within 4Å: Chain A: Q.399, H.400, N.1037 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: P.429, N.431 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: Q.455, W.457, N.464 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.455 NAG.6: 3 residues within 4Å: Chain A: T.504, N.506, Q.515 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.506, A:Q.515 NAG.7: 4 residues within 4Å: Chain A: N.416, A.608, G.609, F.611 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.416 NAG.8: 2 residues within 4Å: Chain A: D.478, N.479 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain A: N.927 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.927 NAG.10: 3 residues within 4Å: Chain A: E.1071, L.1072, N.1075 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.1071, A:L.1072 Hydrogen bonds: A:E.1071, A:N.1075

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.11: 27 residues within 4Å: Chain A: V.380, L.382, W.383, F.404, T.407, Q.409, M.616, E.618, L.621, I.625, V.697, A.768, Q.873, A.876, Y.886, F.887, L.890, F.894, G.897, A.898, P.899, Y.1062, I.1097, T.1098, F.1101, Y.1102, L.1234 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.382, A:W.383, A:W.383, A:L.621, A:F.1101, A:L.1234 Hydrogen bonds: A:Q.873, A:Y.886

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.12: 4 residues within 4Å: Chain A: F.1155, L.1158, W.1159, L.1248 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.1159, A:L.1248 CLR.13: 4 residues within 4Å: Chain A: W.347, L.358, S.359, S.789 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.347, A:L.358 CLR.14: 3 residues within 4Å: Chain A: F.759, L.763, R.770 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.763 CLR.15: 5 residues within 4Å: Chain A: E.374, L.633, L.677, M.684, L.699 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.374, A:L.633, A:L.677, A:L.699

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, M. et al., Structural insights into the mechanism of human NPC1L1-mediated cholesterol uptake. Sci Adv (2021)

Release Date

2021-08-04

Peptides

NPC1-like intracellular cholesterol transporter 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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NPC1-like intracellular cholesterol transporter 1