SMTL ID : 7dg2.1

Nse1-Nse3-Nse4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: M.16, S.17, H.18, E.149, R.164 Chain B: R.91 Chain C: H.69 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.17, A:E.149 Salt bridges: A:R.164, C:H.69 Water bridges: C:H.69 ACT.6: 1 residues within 4Å: Chain B: F.178 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: D.93, Y.94, E.98, Q.141, L.142, S.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.93, A:Q.141 GOL.3: 4 residues within 4Å: Chain A: I.20, Y.76, K.150, H.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.20, A:H.162

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.184, C.187, H.205, C.208 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.184, A:C.187, A:H.205, A:C.208 ZN.5: 4 residues within 4Å: Chain A: C.197, C.200, C.221, C.224 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.197, A:C.200, A:C.221, A:C.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jo, A. et al., Structure Basis for Shaping the Nse4 Protein by the Nse1 and Nse3 Dimer within the Smc5/6 Complex. J.Mol.Biol. (2021)

Release Date

2021-05-26

Peptides

Non-structural maintenance of chromosomes element 1 homolog: A
MAGE domain-containing protein: B
Non-structural maintenance of chromosomes element 4: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Non-structural maintenance of chromosomes element 1 homolog

MAGE domain-containing protein

Non-structural maintenance of chromosomes element 4