SMTL ID : 7dhx.1

Crystal structure of SARS-CoV-2 RBD binding to pangolin ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.36, T.38, E.40, N.41, D.321, R.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.36, A:E.40, A:N.41 NAG.2: 3 residues within 4Å: Chain A: K.9, N.73, I.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:K.9

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.357, E.358, H.361, E.385 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.357, A:H.361, A:E.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, L. et al., Molecular basis of pangolin ACE2 engaged by COVID-19 virus. Chin.Sci.Bull. (2021)

Release Date

2021-09-29

Peptides

pangolin ACE2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

pangolin ACE2

Spike glycoprotein

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