SMTL ID : 7dic.1

Mycoplasma genitalium RNase R in complex with single-stranded RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x A- A- A- A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')(Non-covalent)

A-A-A-A-A-A-A-A-A.1: 44 residues within 4Å: Chain A: G.111, N.112, D.298, P.299, S.302, D.304, L.305, A.306, D.307, Y.349, Y.409, L.454, S.455, H.456, E.458, H.477, E.485, M.488, V.489, N.492, R.509, H.511, L.567, R.568, G.571, K.572, A.573, H.582, S.584, I.585, Y.590, H.592, T.594, S.595, R.598, R.599, R.650, A.675, F.679, F.682, D.691, Q.739, R.741 Ligands: MG.2 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.298, D.307 Ligands: A-A-A-A-A-A-A-A-A.1, A-A-A-A-A-A-A-A-A.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.298, A:D.307, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abula, A. et al., Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation. Nucleic Acids Res. (2021)

Release Date

2021-03-17

Peptides

Ribonuclease R: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease R

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