SMTL ID : 7dij.1

Falcilysin in complex with MK-4815

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: I.204, N.207, E.208, G.1012, Y.1014, R.1032, P.1034 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.208, A:Y.1014, A:R.1032 Water bridges: A:N.207

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: L.220, E.224, S.331, I.410, R.412, S.424 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.220, A:I.410 Hydrogen bonds: A:S.331, A:S.331, A:S.424 ACT.3: 4 residues within 4Å: Chain A: G.114, E.117, N.1000, W.1004 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.117 ACT.4: 5 residues within 4Å: Chain A: P.230, D.231, N.232, V.233, N.236 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 1 residues within 4Å: Ligands: H8F.9 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.416, A:D.416 EDO.6: 3 residues within 4Å: Chain A: F.147, E.278, F.282 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.278 EDO.7: 6 residues within 4Å: Chain A: I.191, P.192, Q.193, K.568, I.571, E.572 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.191, A:Q.193, A:K.568, A:E.572

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.8: 6 residues within 4Å: Chain A: N.386, A.467, A.470, S.471, I.746, E.749 No protein-ligand interaction detected (PLIP)

1 x H8F: 2-(aminomethyl)-3,5-ditert-butyl-phenol(Non-covalent)

H8F.9: 9 residues within 4Å: Chain A: Y.378, D.416, I.478, A.482, D.491, E.495, I.509, F.510 Ligands: EDO.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.478, A:A.482, A:D.491, A:E.495, A:I.509, A:F.510 Hydrogen bonds: A:Y.378, A:D.416, A:E.495 Water bridges: A:E.495

1 x ZN: ZINC ION(Non-covalent)

ZN.10: 3 residues within 4Å: Chain A: H.94, H.98, E.208 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.94, A:H.98, A:E.208, H2O.5, H2O.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J.Q. et al., Protease in complex with inhibitor. To Be Published

Release Date

2021-12-01

Peptides

Falcilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Falcilysin

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