SMTL ID : 7diy.1

Crystal structure of SARS-CoV-2 nsp10 bound to nsp14-exoribonuclease domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.79, C.82, H.88, C.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.79, A:C.82, A:H.88, A:C.95 ZN.2: 4 residues within 4Å: Chain A: C.122, C.125, C.133, C.135 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.122, A:C.125, A:C.133, A:C.135 ZN.3: 4 residues within 4Å: Chain B: C.212, C.215, C.231, H.234 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.212, B:C.215, B:C.231, B:H.234 ZN.4: 4 residues within 4Å: Chain B: H.262, C.266, H.269, C.284 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.262, B:C.266, B:H.269, B:C.284

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain B: D.95, V.96, E.196 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.95, B:E.196, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, S. et al., Crystal structure of SARS-CoV-2 nsp10 bound to nsp14-ExoN domain reveals an exoribonuclease with both structural and functional integrity. Nucleic Acids Res. (2021)

Release Date

2021-05-19

Peptides

nsp10 protein: A
nsp14-ExoN protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

nsp10 protein

nsp14-ExoN protein

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