SMTL ID : 7djz.1

Crystal structure of SARS-CoV-2 Spike RBD in complex with MW01 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain B: K.39, R.45, P.59, R.61, Q.79, E.81 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.59 Hydrogen bonds: B:R.45, B:R.61, B:R.61, B:Q.79 Salt bridges: B:K.39, B:K.39, B:R.45, B:R.61

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain C: F.20, G.21, F.24, N.25, L.50 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.24, C:L.50 Hydrogen bonds: C:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Antibody-dependent enhancement (ADE) of SARS-CoV-2 pseudoviral infection requires Fc gamma RIIB and virus-antibody complex with bivalent interaction. Commun Biol (2022)

Release Date

2021-06-09

Peptides

MW01 heavy chain: A
MW01 light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MW01 heavy chain

MW01 light chain

Spike protein S1

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